Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_026926.1 Length=192108 Score E Sequences producing significant alignments: (Bits) Value seq68655 168 8e-37 seq539347 143 3e-29 seq466961 100 3e-16 seq507140 96.9 4e-15 seq216476 96.9 4e-15 >seq68655 Length=5599 Score = 168 bits (186), Expect = 8e-37 Identities = 191/256 (75%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 181314 GGACGTGAATGGGAACTCTCTTACCGCTTAGGTATGCGCCCCTGGATCTGTGTTGCATAC 181373 || ||||| |||||||| || || | | |||||||| || ||||| ||||||||| Sbjct 722 GGTCGTGAGTGGGAACTTAATTTCCACATGGGTATGCGTCCTTGGATTGATGTTGCATAT 781 Query 181374 TCTGCTCCAGTCGCAGCAGCATCTGCTGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCT 181433 || |||| || ||||| | ||||| | ||| | | || ||| | ||| ||| Sbjct 782 TCAGCTCATGTTGCAGCTACTACTGCTATTTTCTTGATTTACCCTATTGGTTAAGTAAGC 841 Query 181434 TTCTCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGTTTTCCAA 181493 || | ||| | ||||| | || ||||||||||| |||||| ||| |||| ||||| Sbjct 842 TTTTTTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACATTATGATTGTATTCCAG 901 Query 181494 GCAGAGCACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGTGTATTTGGT 181553 |||||||||||||| || |||||||| ||||||||||| ||| | || |||||||| || Sbjct 902 GCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTATAGCTGGTGTATTCGGC 961 Query 181554 GGTTCACTGTTCAGTG 181569 ||||| || ||||||| Sbjct 962 GGTTCCCTATTCAGTG 977 >seq539347 Length=3493 Score = 143 bits (158), Expect = 3e-29 Identities = 128/159 (81%), Gaps = 1/159 (1%) Strand=Plus/Plus Query 181437 TCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCA 181496 ||||| | ||||| | || ||||||||||| ||||||| ||| |||| ||||| ||| Sbjct 1 TCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCA 60 Query 181497 GAGCACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGTGTATTTGGTGGT 181556 ||||||||||| || |||||||| ||||||||||| ||||| || ||||||| || ||| Sbjct 61 GAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAGC-TGTGTATTCGGCGGT 119 Query 181557 TCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCT 181595 | || |||| ||| ||||| ||||| ||||| || ||| Sbjct 120 TTCCTATTCACTGCTATGCATGGTTCCTTGGTAACCTCT 158 >seq466961 Length=778 Score = 100 bits (110), Expect = 3e-16 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 183237 GAAGATCCTGAGTTCGAGACGTTCTACACAAAGAACATCCTTCTCAATGAAGGACTACGT 183296 ||||||||||| || ||||| ||||| || || || || ||| | || || || | ||| Sbjct 777 GAAGATCCTGAATTTGAGACTTTCTANACCAAAAATATTCTTTTAAACGAGGGTATTCGT 718 Query 183297 GCTTGGTTGGCACCTGCCGATCAACCACATGAAAACTTCATCTTCCCTGAAGAAGTTCTA 183356 || ||| ||||| || ||||| || |||||||| | || ||||||||||| |||||| Sbjct 717 GCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAAGAGGTTCTA 658 Query 183357 CCTAGAGGTAACGCACT 183373 || | || ||||| || Sbjct 657 CCACGTGGAAACGCTCT 641 >seq507140 Length=321 Score = 96.9 bits (106), Expect = 4e-15 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 182766 ATTGCTGTATTCGTCAGTGTGTTCCTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTC 182825 |||| ||| || || ||| ||||| || ||||| ||| || || |||||| || Sbjct 49 ATTGTTGTTTTTGTTTCTGTATTCCTTATTTATCCACTGGTGCAATCTGGTTGGTTCTTT 108 Query 182826 GCGCCGTCCTTTGGTGTCGCGGCGATCTTCAGGTTCCTGTTGTTCCTTCAGGGTTTCCAC 182885 |||||| ||||| || || |||| || | ||| | | ||| | || || || || Sbjct 109 GCGCCGAGTTTTGGCGTAGCAACGATATTTCGATTCATCCTTTTCTTCCAAGGATTTCAT 168 Query 182886 AACTGGACACTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTGGGTGGAGCACTG 182945 || ||||| | ||||| || ||||||||||||||||| | || | |||| || ||| Sbjct 169 AATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCCGAGTATTAGGTGCGGCTCTG 228 Query 182946 CTCAGTGCTATCCATGGTGTCACAGTAGAGAATACCTTGTATGAAGATGGAGA 182998 || | ||||| ||||| | || ||||| || || | | ||| || || || Sbjct 229 CTATGCGCTATTCATGGAGCGACCGTAGAAAACACTCTATTTGAGGACGGTGA 281 >seq216476 Length=3150 Score = 96.9 bits (106), Expect = 4e-15 Identities = 165/237 (70%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 182688 GGTTTCATGCTTAGGCAATTTGAACTTGCTCGCCTGATTGGAATCAGACCTTACAATGCG 182747 ||||||||| | | |||||||||| || ||| ||| | ||| ||| ||||| Sbjct 3001 GGTTTCATGTTACGCCAATTTGAACATGATCGATCTATTTAGTTGCGACTTTATAATGCA 2942 Query 182748 ATTGCTTTTTCTGGTCCTATTGCTGTATTC-GTCAGTGTGTTCCTCATCTATCCTTTGGG 182806 || | || |||||||| |||| ||| || || || ||||| | ||||| |||| Sbjct 2941 ATCCCATTCTCTGGTCCAATTGTTGTTTTTTGTTTCCGTATTCCTTCTTTATCCACTGGG 2882 Query 182807 ACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGCGATCTTCAGGTTCCTGTT 182866 || || |||||| || | |||| |||||||| || ||||| || | ||| | | Sbjct 2881 GCAATCTGGTTGGTTCTTTGTGCCGAGTTTTGGTGTAGCAGCGATGTTTTGATTCATCCT 2822 Query 182867 GTTCCTTCAGGGTTTCCACAACTGGACACTCAACCCCTTCCATATGATGGGAGTTGC 182923 ||| | ||| |||| | || |||| | ||||| || ||||||||||||||||| Sbjct 2821 TTTCTTCTAGGATTTC-ATAATTGGATGTTGAACCCATTTCATATGATGGGAGTTGC 2766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 602465787996960