Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq507140 118 2e-21 seq68655 118 2e-21 seq539347 109 8e-19 seq216476 107 3e-18 seq466961 95.1 2e-14 seq398894 93.3 6e-14 seq37697 91.5 2e-13 seq337787 86.0 9e-12 >seq507140 Length=321 Score = 118 bits (130), Expect = 2e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 176261 TGTATTTGTCAGTGTGTTTCTTCTATACCCACTAGGTCAATCTTCCTGGTTCTTTGCCCC 176320 ||| ||||| ||| || ||| | || ||||| | |||||| ||||||||||| || Sbjct 54 TGTTTTTGTTTCTGTATTCCTTATTTATCCACTGGTGCAATCTGGTTGGTTCTTTGCGCC 113 Query 176321 CTCCTTTGGTGTGGCAGCAATCTTTAGATTCCTATTGTTTCTT-CAGGGTTTCCACAACT 176379 ||||| || ||| | || ||| ||||| | | |||||| || || || || || | Sbjct 114 GAGTTTTGGCGTAGCAACGATATTTCGATTCATCCT-TTTCTTCCAAGGATTTCATAATT 172 Query 176380 GGACACTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTAT 176439 |||| ||||||| || ||||||||||||||||| | || |||||| || || |||| Sbjct 173 GGACGTTGAACCCATTTCATATGATGGGAGTTGCCCGAGTATTAGGTGCGGCTCTGCTAT 232 Query 176440 CTGCAATCCATGGCGTTACTGTTGAAAATACCCTATATGAAGATGGAGA 176488 || || ||||| | || || ||||| || |||| ||| || || || Sbjct 233 GCGCTATTCATGGAGCGACCGTAGAAAACACTCTATTTGAGGACGGTGA 281 >seq68655 Length=5599 Score = 118 bits (130), Expect = 2e-21 Identities = 173/245 (71%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 174801 GGACGTGAGTGGGAACTCTCTTATCGTTTAGGTATGAGACCTTGGATCTGTGTAGCATAC 174860 || |||||||||||||| || | | |||||| | |||||||| ||| ||||| Sbjct 722 GGTCGTGAGTGGGAACTTAATTTCCACATGGGTATGCGTCCTTGGATTGATGTTGCATAT 781 Query 174861 TCTGCACCAGTTGCAGCAGCTTCAGCAGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCA 174920 || || | |||||||| || | || | ||| | | || ||| | ||| ||| Sbjct 782 TCAGCTCATGTTGCAGCTACTACTGCTATTTTCTTGATTTACCCTATTGGTTAAGTAAGC 841 Query 174921 TTCTCAGACGCGATGCCCTTGGGTATCTCTGGAACATTCAACTACATGTTGGTCTTCCAA 174980 || | || | ||||| || || |||||||| || |||||| ||| | || ||||| Sbjct 842 TTTTTTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACATTATGATTGTATTCCAG 901 Query 174981 GCAGAACATAACATCTTGATGCACCCCTTCCACATGTTGGGAGTCGCAGGTGTCTTCGGT 175040 ||||| || |||||| | ||||| || ||||||||||| || | || ||||| ||||| Sbjct 902 GCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTATAGCTGGTGTATTCGGC 961 Query 175041 GGTTC 175045 ||||| Sbjct 962 GGTTC 966 >seq539347 Length=3493 Score = 109 bits (120), Expect = 8e-19 Identities = 115/150 (77%), Gaps = 1/150 (1%) Strand=Plus/Plus Query 174933 ATGCCCTTGGGTATCTCTGGAACATTCAACTACATGTTGGTCTTCCAAGCAGAACATAAC 174992 ||||| || || |||||||| || ||||||| ||| | || ||||| ||||| || ||| Sbjct 10 ATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCACAAC 69 Query 174993 ATCTTGATGCACCCCTTCCACATGTTGGGAGTCGCAGGTGTCTTCGGTGGTTCATTGTTC 175052 ||| | ||||| || ||||||||||| || || || |||| ||||| |||| | ||| Sbjct 70 ATCCTTATGCATCCATTCCACATGTTAGGTGTAGC-TGTGTATTCGGCGGTTTCCTATTC 128 Query 175053 TCAGCGATGCATGGTTCACTTGTTACCTCT 175082 | || ||||||||||| | || |||||| Sbjct 129 ACTGCTATGCATGGTTCCTTGGTAACCTCT 158 >seq216476 Length=3150 Score = 107 bits (118), Expect = 3e-18 Identities = 193/277 (70%), Gaps = 4/277 (1%) Strand=Plus/Minus Query 176178 GGATTCATGCTTCGTCAGTTTGAACTGGCAAGA-CTCATTGGTATCCGTCCCTACAACGC 176236 || |||||| | || || ||||||| | || || || || | || | || || || Sbjct 3001 GGTTTCATGTTACGCCAATTTGAACATGATCGATCTATTTAGT-TGCGACTTTATAATGC 2943 Query 176237 TATTGCATTCAGTGGTCCTATCGCTGTATTT-GTCAGTGTGTTTCTTCTATACCCACTAG 176295 || ||||| |||||| || | ||| ||| || || || ||||| || ||||| | Sbjct 2942 AATCCCATTCTCTGGTCCAATTGTTGTTTTTTGTTTCCGTATTCCTTCTTTATCCACTGG 2883 Query 176296 GTCAATCTTCCTGGTTCTTTGCCCCCTCCTTTGGTGTGGCAGCAATCTTTAGATTCCTAT 176355 | |||||| |||||||||| || |||||||| ||||| || ||| ||||| | Sbjct 2882 GGCAATCTGGTTGGTTCTTTGTGCCGAGTTTTGGTGTAGCAGCGATGTTTTGATTCATCC 2823 Query 176356 TGTTTCTTCAGGGTTTCCACAACTGGACACTGAACCCCTTCCATATGATGGGAGTTGCTG 176415 | ||||||| || || || || |||| ||||||| || ||||||||||||||||| Sbjct 2822 T-TTTCTTCTAGGATTTCATAATTGGATGTTGAACCCATTTCATATGATGGGAGTTGCCA 2764 Query 176416 GTATACTAGGTGGAGCACTACTATCTGCAATCCATGG 176452 ||| |||| | || |||| || | || ||||| Sbjct 2763 AAATATTAGGCGTGGCTCTACGATGCACTATTCATGG 2727 >seq466961 Length=778 Score = 95.1 bits (104), Expect = 2e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 176727 GAAGATCCTGAGTTTGAAACTTTCTACACAAAGAACATCCTTCTTAACGAAGGACTAAGA 176786 ||||||||||| ||||| |||||||| || || || || ||| | ||||| || | | Sbjct 777 GAAGATCCTGAATTTGAGACTTTCTANACCAAAAATATTCTTTTAAACGAGGGTATTCGT 718 Query 176787 GCATGGATGGCACCTGTGGATCAACCACATGAGTCATTTGTATTCCCAGAAGAAGTTCTA 176846 || ||||||||| || |||||| || ||||| || ||||||| ||||| |||||| Sbjct 717 GCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAAGAGGTTCTA 658 Query 176847 CCTAGAGGTAACGC 176860 || | || ||||| Sbjct 657 CCACGTGGAAACGC 644 >seq398894 Length=318 Score = 93.3 bits (102), Expect = 6e-14 Identities = 114/153 (75%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 174495 AATCGTCTTTACGTCGGTTGGTTCGGTGTTCTAATGATTCCTACATTGTTAGCCGCAACT 174554 |||| ||||||| |||| |||||||||||| | ||||| ||||| || || ||||| Sbjct 167 AATCATCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGAGTACAACT 226 Query 174555 GTATGT-TTCATTATCGCTTTCGTGGGTGCTCCCCCAGTGGACATCGACGGAATCCGTGA 174613 | || || |||||||| ||| | | ||| || ||||| || || || || || ||||| Sbjct 227 -TCCGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGA 285 Query 174614 ACCAGTAGCTGGTTCACTCATGTATGGAAACAA 174646 || || ||||||| | | ||||||||||| Sbjct 286 GCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 318 >seq37697 Length=321 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/230 (69%), Gaps = 1/230 (0%) Strand=Plus/Plus Query 176229 TACAACGCTATTGCATTCAGTGGTCCTATCGCTGTATTTGTCAGTGTGTTTCTTCTATAC 176288 || || || || ||||| |||| | || | ||| ||||| || || ||| | || Sbjct 3 TATAATGCAATCCCATTCTCTGGTTCAATTGTTGTTTTTGTTTTCGTATTCCTTATTTAT 62 Query 176289 CCACTAGGTCAATCTTCCTGGTTCTTTGCCCCCTCCTTTGGTGTGGCAGCAATCTTTAGA 176348 ||||| || |||||| ||||||||||| || |||||| | || || || ||| | Sbjct 63 CCACTGGGGCAATCTGGCTGGTTCTTTGTGCCGAGTTTTGGTATAGCTGCGATATTTTGT 122 Query 176349 TTCCTATTGTTTCTTCAGGGTTTCCACAACTGGACACTGAACCCCTTCCATATGATGGGA 176408 ||| | | ||||||| || || || || |||| ||||||| || ||||||| |||| Sbjct 123 TTCATCCT-TTTCTTCTAGGATTTCAAAATTGGATGTTGAACCCATTTCATATGACGGGA 181 Query 176409 GTTGCTGGTATACTAGGTGGAGCACTACTATCTGCAATCCATGGCGTTAC 176458 ||||| ||| |||| | || |||| || | || ||||| || || Sbjct 182 GTTGCCTAAATATTAGGCGTGGCTCTACGATGCACTATTCATGGAGTGAC 231 >seq337787 Length=336 Score = 86.0 bits (94), Expect = 9e-12 Identities = 170/249 (68%), Gaps = 3/249 (1%) Strand=Plus/Plus Query 174459 TGGGATCAGTTTTGTTCCTGGGTCACATCAACCAACAATCGTCTTTACGTCGGTTGGTTC 174518 |||||||| || || |||| | || || | |||||||||||| |||| || ||| Sbjct 88 TGGGATCACTTCTGCAACTGGATAACTAGCACTGAAAATCGTCTTTACATCGGATGATTC 147 Query 174519 GGTGTTCTAATGATTCCTACATTGTTAGCCGCAACTGTATGT-TTCATTATCGCTTTCGT 174577 |||||| | |||| ||||| || || | ||||| ||||| || |||||| | ||| | Sbjct 148 GGTGTTTTGATGACCCCTACCTTATTGACTGCAAC-CTATGTATTTATTATCTCCTTCAT 206 Query 174578 GGGTGCTCCCCCAGTGGACATCGACGGAATCCGTGAACCAGTAGCTGGTTCACTCATGTA 174637 ||| || ||| | || || || || || ||||| | || || |||| | | || Sbjct 207 CACTGCCCCTCCACTAGATATTGATGGTATTCGTGAGCATGT-TCTTGTTCTTTACTTTA 265 Query 174638 TGGAAACAACATCATCTCTGGTGCAGTTGTTCCTAGTTCAAACGCAATCGGTCTACACTT 174697 ||||||||| || ||||||| || | || | ||| | | ||| | ||||| Sbjct 266 TGGAAACAATATTNNNNCTGGTGCTATTATCCCCACTTCTGCGGTGAACGGATTGCACTT 325 Query 174698 CTACCCAAT 174706 |||||||| Sbjct 326 TTACCCAAT 334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715497915527160