Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq68655 159 4e-34 seq539347 140 4e-28 seq507140 118 1e-21 seq216476 111 2e-19 seq428484 100 3e-16 seq532379 93.3 5e-14 >seq68655 Length=5599 Score = 159 bits (176), Expect = 4e-34 Identities = 189/256 (74%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 178182 GGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATAC 178241 || ||||||||||||||| | || | |||||||| || ||||| ||| ||||| Sbjct 722 GGTCGTGAGTGGGAACTTAATTTCCACATGGGTATGCGTCCTTGGATTGATGTTGCATAT 781 Query 178242 TCTGCTCCAGTAGCAGCAGCATCGGCAGTATTCCTGGTCTATCCTTTCGGTCAAGGTTCA 178301 || |||| || ||||| | | || | ||| || | || ||| | ||| ||| Sbjct 782 TCAGCTCATGTTGCAGCTACTACTGCTATTTTCTTGATTTACCCTATTGGTTAAGTAAGC 841 Query 178302 TTTTCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGTTTTCCAA 178361 |||| ||| | ||||| | || ||||||||||| |||||| ||| |||| ||||| Sbjct 842 TTTTTTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACATTATGATTGTATTCCAG 901 Query 178362 GCAGAACACAACATTCTGATGCACCCCTTCCACATGTTGGGTGTCGCAGGTGTATTCGGT 178421 ||||| |||||||| || ||||| || ||||||||||| ||| | || ||||||||||| Sbjct 902 GCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTATAGCTGGTGTATTCGGC 961 Query 178422 GGTTCACTGTTCAGTG 178437 ||||| || ||||||| Sbjct 962 GGTTCCCTATTCAGTG 977 >seq539347 Length=3493 Score = 140 bits (154), Expect = 4e-28 Identities = 127/159 (80%), Gaps = 1/159 (1%) Strand=Plus/Plus Query 178305 TCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCA 178364 ||||| | ||||| | || ||||||||||| ||||||| ||| |||| ||||| ||| Sbjct 1 TCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCA 60 Query 178365 GAACACAACATTCTGATGCACCCCTTCCACATGTTGGGTGTCGCAGGTGTATTCGGTGGT 178424 || |||||||| || ||||| || ||||||||||| ||||| || |||||||||| ||| Sbjct 61 GAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAGC-TGTGTATTCGGCGGT 119 Query 178425 TCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCT 178463 | || |||| ||| ||||| ||||| ||||| || ||| Sbjct 120 TTCCTATTCACTGCTATGCATGGTTCCTTGGTAACCTCT 158 >seq507140 Length=321 Score = 118 bits (130), Expect = 1e-21 Identities = 175/248 (71%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 179628 ATTGCTGTATTCGTCAGTGTTTTCCTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTC 179687 |||| ||| || || ||| ||||| || ||||| ||| || || |||||| || Sbjct 49 ATTGTTGTTTTTGTTTCTGTATTCCTTATTTATCCACTGGTGCAATCTGGTTGGTTCTTT 108 Query 179688 GCGCCGTCCTTTGGTGTCGCGGCGATCTTCAGGTTCTTGCTGTTCCTTCAGGGTTTCCAC 179747 |||||| ||||| || || |||| || | ||| | || ||| | || || || || Sbjct 109 GCGCCGAGTTTTGGCGTAGCAACGATATTTCGATTCATCCTTTTCTTCCAAGGATTTCAT 168 Query 179748 AACTGGACGCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTG 179807 || |||||| | ||||| || ||||||||||||||||| | || |||| | || ||| Sbjct 169 AATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCCGAGTATTAGGTGCGGCTCTG 228 Query 179808 CTCAGTGCTATCCATGGAGTTACTGTAGAGAATACATTGTATGAAGATGGAGAACAAGCA 179867 || | ||||| ||||||| || ||||| || || | | ||| || || || ||| Sbjct 229 CTATGCGCTATTCATGGAGCGACCGTAGAAAACACTCTATTTGAGGACGGTGATGGTGCA 288 Query 179868 AATACCTT 179875 |||||||| Sbjct 289 AATACCTT 296 >seq216476 Length=3150 Score = 111 bits (122), Expect = 2e-19 Identities = 195/279 (70%), Gaps = 4/279 (1%) Strand=Plus/Minus Query 179550 GGTTTCATGCTTAGGCAATTTGAACTTGCTCGC-CTGATTGGTATCAGACCTTACAATGC 179608 ||||||||| | | |||||||||| || ||| || || || | ||| ||| ||||| Sbjct 3001 GGTTTCATGTTACGCCAATTTGAACATGATCGATCTATTTAGTTGC-GACTTTATAATGC 2943 Query 179609 GATTGCTTTTTCTGGTCCTATTGCTGTATTC-GTCAGTGTTTTCCTCATCTATCCTTTGG 179667 || | || |||||||| |||| ||| || || || ||||| | ||||| ||| Sbjct 2942 AATCCCATTCTCTGGTCCAATTGTTGTTTTTTGTTTCCGTATTCCTTCTTTATCCACTGG 2883 Query 179668 GACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGCGATCTTCAGGTTCTTGC 179727 | || || |||||| || | |||| |||||||| || ||||| || | ||| | | Sbjct 2882 GGCAATCTGGTTGGTTCTTTGTGCCGAGTTTTGGTGTAGCAGCGATGTTTTGATTCATCC 2823 Query 179728 TGTTCCTTCAGGGTTTCCACAACTGGACGCTCAACCCCTTCCATATGATGGGAGTTGCTG 179787 | ||| | ||| |||| | || |||| | | ||||| || ||||||||||||||||| Sbjct 2822 TTTTCTTCTAGGATTTC-ATAATTGGATGTTGAACCCATTTCATATGATGGGAGTTGCCA 2764 Query 179788 GTATACTAGGAGGAGCACTGCTCAGTGCTATCCATGGAG 179826 ||| |||| | || || | | |||| ||||||| Sbjct 2763 AAATATTAGGCGTGGCTCTACGATGCACTATTCATGGAG 2725 >seq428484 Length=423 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 179865 GCAAATACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACT 179924 ||||||||||| || ||| | | || || || ||||| |||||||| ||||||||| Sbjct 217 GCAAATACCTTCCGTGCTTTTAACCCAACTCAAGATGAAGAAACTTATTCAATGGTCACT 276 Query 179925 GCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCATTTTCTAACAAGCGGTGGCTTCAT 179984 || |||||||| ||||| || ||||| ||| |||| ||||| || || || ||| | ||| Sbjct 277 GCTAACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACAT 336 Query 179985 TTTTT 179989 |||| Sbjct 337 CTTTT 341 >seq532379 Length=15352 Score = 93.3 bits (102), Expect = 5e-14 Identities = 127/176 (72%), Gaps = 1/176 (1%) Strand=Plus/Plus Query 179250 CGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTCTTCCCACTGCTTATCTT 179309 ||||| || || || ||||| || |||||||| || | || |||| ||||||| | Sbjct 14385 CGGGACCGTTTCGTTTTTGTAGGATGGTCTGGCCTATTGCTCTTTCCTTGTGCTTATTTC 14444 Query 179310 GCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTTGGTACACCCACGGTCTT 179369 || | || ||||| |||| |||||| ||||||| || |||||| ||||| | | | Sbjct 14445 GCTTTAGGGTGTTGGTTTACCGGGACAACTTTTGTAACTTTTTGGTATACCCATGAT-TG 14503 Query 179370 GCTAGTTCCTATCTTGAGGGTGCTAACTTTCTTACGGCAGCTGTCTCGACGCCTGC 179425 |||||||||||| | || || ||| ||| | || |||| || || || ||||| Sbjct 14504 GCTAGTTCCTATTTGGAAGGCTGTAATTTTTTAACCGCAGTAGTTTCTACCCCTGC 14559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 594027979670160