Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq68655 158 1e-33 seq539347 141 1e-28 seq507140 141 1e-28 seq216476 127 2e-24 seq550293 102 9e-17 seq532379 100 3e-16 seq428484 100 3e-16 seq466961 95.1 1e-14 seq542539 82.4 8e-11 >seq68655 Length=5599 Score = 158 bits (174), Expect = 1e-33 Identities = 186/252 (74%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 158712 GGACGTGAATGGGAACTTTCATACCGCTTAGGTATGCGCCCCTGGATCTGTGTAGCATAT 158771 || ||||| ||||||||| | || | | |||||||| || ||||| ||| |||||| Sbjct 722 GGTCGTGAGTGGGAACTTAATTTCCACATGGGTATGCGTCCTTGGATTGATGTTGCATAT 781 Query 158772 TCTGCACCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCT 158831 || || | || || || | ||||| | ||| | | || ||| | ||| ||| Sbjct 782 TCAGCTCATGTTGCAGCTACTACTGCTATTTTCTTGATTTACCCTATTGGTTAAGTAAGC 841 Query 158832 TTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAA 158891 || | |||| ||||||| | || |||||||||||||| ||| ||| |||||||||| Sbjct 842 TTTTTTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACATTATGATTGTATTCCAG 901 Query 158892 GCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGT 158951 ||||| ||||||||||||||||| || ||||| ||| | ||| | ||||| |||||||| Sbjct 902 GCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTATAGCTGGTGTATTCGGC 961 Query 158952 GGATCTCTTTTC 158963 || || || ||| Sbjct 962 GGTTCCCTATTC 973 >seq539347 Length=3493 Score = 141 bits (156), Expect = 1e-28 Identities = 118/143 (83%), Gaps = 1/143 (1%) Strand=Plus/Plus Query 158835 TCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCA 158894 || |||| ||||||| | || |||||||||||||| |||| ||| |||||||||| ||| Sbjct 1 TCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCA 60 Query 158895 GAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGA 158954 || ||||||||||||||||| || ||||| ||| | ||||| ||| | |||||||| || Sbjct 61 GAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAGCT-GTGTATTCGGCGGT 119 Query 158955 TCTCTTTTCTCTGCTATGCATGG 158977 | || ||| ||||||||||||| Sbjct 120 TTCCTATTCACTGCTATGCATGG 142 >seq507140 Length=321 Score = 141 bits (156), Expect = 1e-28 Identities = 180/248 (73%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 160304 ATTGCTGTCTTTGTCAGCGTATTCCTCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTC 160363 |||| ||| ||||| |||||||| || || ||| ||| || || ||||||| || Sbjct 49 ATTGTTGTTTTTGTTTCTGTATTCCTTATTTATCCACTGGTGCAATCTGGTTGGTTCTTT 108 Query 160364 GCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCAC 160423 || ||| ||||| || ||| | || ||| ||||| | | ||| | ||||||||||| Sbjct 109 GCGCCGAGTTTTGGCGTAGCAACGATATTTCGATTCATCCTTTTCTTCCAAGGATTTCAT 168 Query 160424 AACTGGACGCTTAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTG 160483 || |||||| | ||||| || ||||||||||||||||| | || |||| | || ||| Sbjct 169 AATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCCGAGTATTAGGTGCGGCTCTG 228 Query 160484 CTCAGTGCCATCCATGGCGTTACTGTAGAGAACACACTGTATGAAGATGGAGAACAAGCA 160543 || | || || ||||| | || ||||| ||||| || | ||| || || || ||| Sbjct 229 CTATGCGCTATTCATGGAGCGACCGTAGAAAACACTCTATTTGAGGACGGTGATGGTGCA 288 Query 160544 AATACCTT 160551 |||||||| Sbjct 289 AATACCTT 296 >seq216476 Length=3150 Score = 127 bits (140), Expect = 2e-24 Identities = 174/238 (73%), Gaps = 4/238 (2%) Strand=Plus/Minus Query 160226 GGATTCATGCTCCGTCAGTTTGAACTGGCACG-TCTCATCGGTATCCGTCCTTACAATGC 160284 || |||||| | || || ||||||| | || ||| | || | || | ||| ||||| Sbjct 3001 GGTTTCATGTTACGCCAATTTGAACATGATCGATCTATTTAGT-TGCGACTTTATAATGC 2943 Query 160285 TATTGCGTTCTCTGGTCCTATTGCTGTCTTT-GTCAGCGTATTCCTCATCTACCCATTGG 160343 || | ||||||||||| |||| ||| ||| || ||||||||| | || ||| ||| Sbjct 2942 AATCCCATTCTCTGGTCCAATTGTTGTTTTTTGTTTCCGTATTCCTTCTTTATCCACTGG 2883 Query 160344 GTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGT 160403 | || || ||||||| || | ||| ||||| || ||||| || ||| ||||| | Sbjct 2882 GGCAATCTGGTTGGTTCTTTGTGCCGAGTTTTGGTGTAGCAGCGATGTTTTGATTCATCC 2823 Query 160404 TGTTCCTTCAAGGATTTCACAACTGGACGCTTAACCCCTTCCATATGATGGGAGTTGC 160461 | ||| ||| ||||||||| || |||| | | ||||| || ||||||||||||||||| Sbjct 2822 TTTTC-TTCTAGGATTTCATAATTGGATGTTGAACCCATTTCATATGATGGGAGTTGC 2766 >seq550293 Length=8024 Score = 102 bits (112), Expect = 9e-17 Identities = 178/255 (70%), Gaps = 3/255 (1%) Strand=Plus/Minus Query 160207 TGGTGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACTGGCACG-TCTCATCG 160265 || ||| || || | ||| || |||||| | | | | |||||||| || || ||| || Sbjct 7589 TGTTGCTTTTGCACCAATAGGTTTCATGTTACATTAATTTGAACTTGCTCGGTCTGTTCA 7530 Query 160266 GTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTCTTTGTCAGCGTAT 160325 | | || |||| ||||| || |||||||| |||| |||||| | || | | | ||| Sbjct 7529 AT-TACGATCTTATAATGCAATCTCGTTCTCTAGTCCAATTGCTATTTTGTTTATC-TAT 7472 Query 160326 TCCTCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAG 160385 || | || || ||| | || || || ||||||| || || || || | | ||| Sbjct 7471 TCTTTATTTATCCACTCGGGCAATCTGGTTGGTTCTTTGCATCGAGTTTCAGCATAGCAA 7412 Query 160386 CAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGCTTAACCCCTTCC 160445 | || ||||||||| | | ||| | ||| | || || || |||| | | ||||| || | Sbjct 7411 CGATATTTAGATTCATCATTTTCTTCCAATGTTTACATAATTGGAGGTTGAACCCATTTC 7352 Query 160446 ATATGATGGGAGTTG 160460 ||||||||||||||| Sbjct 7351 ATATGATGGGAGTTG 7337 >seq532379 Length=15352 Score = 100 bits (110), Expect = 3e-16 Identities = 107/140 (76%), Gaps = 1/140 (1%) Strand=Plus/Plus Query 159926 CGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTCTTCCCACTGCTTATCTT 159985 ||||| |||||||||||||| || |||||||| || | || |||| ||||||| | Sbjct 14385 CGGGACCGTTTCGTTTTTGTAGGATGGTCTGGCCTATTGCTCTTTCCTTGTGCTTATTTC 14444 Query 159986 GCTATTGGCGGTTGGCTTACTGGAACAACTTTCGCAACGAGCTGGTATACCCATGGACTC 160045 ||| | || ||||| |||| || |||||||| | ||| |||||||||||| || | Sbjct 14445 GCTTTAGGGTGTTGGTTTACCGGGACAACTTTTGTAACTTTTTGGTATACCCAT-GATTG 14503 Query 160046 GCTAGTTCCTATCTTGAGGG 160065 |||||||||||| | || || Sbjct 14504 GCTAGTTCCTATTTGGAAGG 14523 >seq428484 Length=423 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 160541 GCAAATACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACT 160600 ||||||||||| || ||| | | || || || ||||| |||||||| ||||||||| Sbjct 217 GCAAATACCTTCCGTGCTTTTAACCCAACTCAAGATGAAGAAACTTATTCAATGGTCACT 276 Query 160601 GCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCAT 160660 || |||||||| ||||| || ||||| ||| |||| ||||| || || || ||| | ||| Sbjct 277 GCTAACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACAT 336 Query 160661 TTTTT 160665 |||| Sbjct 337 CTTTT 341 >seq466961 Length=778 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 160775 GAAGATCCAGAATTTGAGACCTTCTACACCAAGAACATCCTACTGAATGAAGGACTACGT 160834 |||||||| ||||||||||| ||||| ||||| || || || | || || || | ||| Sbjct 777 GAAGATCCTGAATTTGAGACTTTCTANACCAAAAATATTCTTTTAAACGAGGGTATTCGT 718 Query 160835 GCATGGTTAGCACCTGCCGACCAACCCCATGAGAACTTTATCTTCCCAGAAGAAGTTCTT 160894 || ||| | ||| || || || || ||||| || |||| ||||| ||||| ||||| Sbjct 717 GCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAAGAGGTTCTA 658 Query 160895 CCTAGAGGCAACGCCCTTTAAT 160916 || | || ||||| ||||||| Sbjct 657 CCACGTGGAAACGCTCTTTAAT 636 >seq542539 Length=11310 Score = 82.4 bits (90), Expect = 8e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 159228 TTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGAT 159287 ||||| ||||| || || | ||||| || | ||||| | | | || ||||| ||| Sbjct 7093 TTCAATTTCAATCAATCTGTAGTTGATAGTTAAGGTCGCATTATTGATACTTGGGCTGAT 7034 Query 159288 GTACTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTC 159347 | | |||||||| || ||| |||||||||||||| | ||||| || ||||||||| Sbjct 7033 ATCATCAACCGTGCTAACCTTGGTGTGGAAGTTATGCATAAACGTAATGCTCACAACTTC 6974 Query 159348 CCACTCGACCTTGCTGCTGCTGA 159370 || || ||| | |||| || ||| Sbjct 6973 CCTCTAGACTTAGCTGATGTTGA 6951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 541550457994560