Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq68655 170 2e-37 seq539347 141 1e-28 seq216476 140 4e-28 seq507140 132 6e-26 seq37697 111 2e-19 seq466961 104 3e-17 seq428484 100 3e-16 seq550293 93.3 5e-14 seq40677 93.3 5e-14 seq398894 84.2 3e-11 seq337787 82.4 9e-11 >seq68655 Length=5599 Score = 170 bits (188), Expect = 2e-37 Identities = 189/252 (75%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 179194 GGACGTGAGTGGGAACTTTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTTGCATAC 179253 || ||||||||||||||| || || | ||||||||||| ||||| ||||||||| Sbjct 722 GGTCGTGAGTGGGAACTTAATTTCCACATGGGTATGCGTCCTTGGATTGATGTTGCATAT 781 Query 179254 TCTGCACCAGTCGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCT 179313 || || | || || ||| | | ||| | ||| | | || ||| | ||| ||| Sbjct 782 TCAGCTCATGTTGCAGCTACTACTGCTATTTTCTTGATTTACCCTATTGGTTAAGTAAGC 841 Query 179314 TTCTCTGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAA 179373 || | ||||| ||||||| | || |||||||||||||| ||| ||| |||||||||| Sbjct 842 TTTTTTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACATTATGATTGTATTCCAG 901 Query 179374 GCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGT 179433 ||||| ||||||||||||||||| || ||||| ||| | ||| | ||||| |||||||| Sbjct 902 GCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTATAGCTGGTGTATTCGGC 961 Query 179434 GGATCTCTTTTC 179445 || || || ||| Sbjct 962 GGTTCCCTATTC 973 >seq539347 Length=3493 Score = 141 bits (156), Expect = 1e-28 Identities = 118/143 (83%), Gaps = 1/143 (1%) Strand=Plus/Plus Query 179317 TCTGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCA 179376 ||||||| ||||||| | || |||||||||||||| |||| ||| |||||||||| ||| Sbjct 1 TCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCA 60 Query 179377 GAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGA 179436 || ||||||||||||||||| || ||||| ||| | ||||| ||| | |||||||| || Sbjct 61 GAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAGCT-GTGTATTCGGCGGT 119 Query 179437 TCTCTTTTCTCTGCTATGCACGG 179459 | || ||| |||||||||| || Sbjct 120 TTCCTATTCACTGCTATGCATGG 142 >seq216476 Length=3150 Score = 140 bits (154), Expect = 4e-28 Identities = 177/238 (74%), Gaps = 4/238 (2%) Strand=Plus/Minus Query 180348 GGATTTATGCTACGCCAGTTTGAACTGGCACG-TCTTATTGGTATCCGTCCTTACAATGC 180406 || || ||| ||||||| ||||||| | || ||| || || | || | ||| ||||| Sbjct 3001 GGTTTCATGTTACGCCAATTTGAACATGATCGATCTATTTAGT-TGCGACTTTATAATGC 2943 Query 180407 TATTGCATTCTCTGGTCCTATCGCTGTATTT-GTCAGCGTATTTCTCATCTACCCACTGG 180465 || ||||||||||||| || | ||| ||| || |||||| || | || ||||||| Sbjct 2942 AATCCCATTCTCTGGTCCAATTGTTGTTTTTTGTTTCCGTATTCCTTCTTTATCCACTGG 2883 Query 180466 GTCAGTCCAGTTGGTTCTTTGCTCCCTCTTTTGGGGTAGCAGCAATCTTTAGATTCCTAC 180525 | || || |||||||||||| || |||||| |||||||| || ||| ||||| | | Sbjct 2882 GGCAATCTGGTTGGTTCTTTGTGCCGAGTTTTGGTGTAGCAGCGATGTTTTGATTCATCC 2823 Query 180526 TCTTTCTTCAGGGTTTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGAGTTGC 180583 | ||||||| || || || || |||| | ||||| || ||||||||||||||||| Sbjct 2822 T-TTTCTTCTAGGATTTCATAATTGGATGTTGAACCCATTTCATATGATGGGAGTTGC 2766 >seq507140 Length=321 Score = 132 bits (146), Expect = 6e-26 Identities = 191/267 (72%), Gaps = 2/267 (1%) Strand=Plus/Plus Query 180431 TGTATTTGTCAGCGTATTTCTCATCTACCCACTGGGTCAGTCCAGTTGGTTCTTTGCTCC 180490 ||| ||||| ||||| || || || ||||||| || || ||||||||||||| || Sbjct 54 TGTTTTTGTTTCTGTATTCCTTATTTATCCACTGGTGCAATCTGGTTGGTTCTTTGCGCC 113 Query 180491 CTCTTTTGGGGTAGCAGCAATCTTTAGATTCCTACTCTTTCTT-CAGGGTTTCCACAACT 180549 |||||| |||||| | || ||| ||||| | || |||||| || || || || || | Sbjct 114 GAGTTTTGGCGTAGCAACGATATTTCGATTCATCCT-TTTCTTCCAAGGATTTCATAATT 172 Query 180550 GGACCCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCATTGCTAT 180609 |||| | ||||| || ||||||||||||||||| | || |||||| || |||||| Sbjct 173 GGACGTTGAACCCATTTCATATGATGGGAGTTGCCCGAGTATTAGGTGCGGCTCTGCTAT 232 Query 180610 CAGCAATCCATGGCGTAACTGTGGAGAACACACTGTATGAAGATGGAGAACAAGCAAACA 180669 || || ||||| | || || || ||||| || | ||| || || || ||||| | Sbjct 233 GCGCTATTCATGGAGCGACCGTAGAAAACACTCTATTTGAGGACGGTGATGGTGCAAATA 292 Query 180670 CCTTTAAGGCATTTGATTCAACGCAAG 180696 |||| || ||| | |||| |||| Sbjct 293 CCTTCTGTGCTTTTAACCCAACTCAAG 319 >seq37697 Length=321 Score = 111 bits (122), Expect = 2e-19 Identities = 137/186 (74%), Gaps = 1/186 (1%) Strand=Plus/Plus Query 180398 TTACAATGCTATTGCATTCTCTGGTCCTATCGCTGTATTTGTCAGCGTATTTCTCATCTA 180457 ||| ||||| || ||||||||||| | || | ||| ||||| |||||| || || || Sbjct 2 TTATAATGCAATCCCATTCTCTGGTTCAATTGTTGTTTTTGTTTTCGTATTCCTTATTTA 61 Query 180458 CCCACTGGGTCAGTCCAGTTGGTTCTTTGCTCCCTCTTTTGGGGTAGCAGCAATCTTTAG 180517 |||||||| || || | |||||||||| || |||||| |||| || || ||| | Sbjct 62 TCCACTGGGGCAATCTGGCTGGTTCTTTGTGCCGAGTTTTGGTATAGCTGCGATATTTTG 121 Query 180518 ATTCCTACTCTTTCTTCAGGGTTTCCACAACTGGACCCTCAACCCCTTCCATATGATGGG 180577 ||| | || ||||||| || || || || |||| | ||||| || ||||||| ||| Sbjct 122 TTTCATCCT-TTTCTTCTAGGATTTCAAAATTGGATGTTGAACCCATTTCATATGACGGG 180 Query 180578 AGTTGC 180583 |||||| Sbjct 181 AGTTGC 186 >seq466961 Length=778 Score = 104 bits (114), Expect = 3e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 180897 GAAGATCCTGAGTTCGAGACGTTCTACACCAAGAACATCCTATTGAATGAAGGACTACGT 180956 ||||||||||| || ||||| ||||| ||||| || || || || || || || | ||| Sbjct 777 GAAGATCCTGAATTTGAGACTTTCTANACCAAAAATATTCTTTTAAACGAGGGTATTCGT 718 Query 180957 GCATGGTTGGCACCTGCCGATCAACCACACGAAAACTTCATCTTCCCTGAAGAAGTTCTA 181016 || ||| ||||| || ||||| || || ||||| | || ||||||||||| |||||| Sbjct 717 GCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAAGAGGTTCTA 658 Query 181017 CCAAGAGGTAACGC 181030 ||| | || ||||| Sbjct 657 CCACGTGGAAACGC 644 >seq428484 Length=423 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 180663 GCAAACACCTTTAAGGCATTTGATTCAACGCAAGAGGAGGAAACTTACTCTATGGTCACT 180722 ||||| ||||| || ||| | |||| ||||| || |||||||| || ||||||||| Sbjct 217 GCAAATACCTTCCGTGCTTTTAACCCAACTCAAGATGAAGAAACTTATTCAATGGTCACT 276 Query 180723 GCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCATTTTCTAACAAGCGGTGGCTTCAT 180782 || |||||||| ||||| || ||||| ||| |||| ||||| || || || ||| | ||| Sbjct 277 GCTAACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACAT 336 Query 180783 TTTTT 180787 |||| Sbjct 337 CTTTT 341 >seq550293 Length=8024 Score = 93.3 bits (102), Expect = 5e-14 Identities = 174/252 (69%), Gaps = 3/252 (1%) Strand=Plus/Minus Query 180332 TGCCTTCGCCCTAATTGGATTTATGCTACGCCAGTTTGAACTGGCACGTCTTATTGGTAT 180391 ||| || || | ||| || || ||| ||| | |||||||| || || | || | Sbjct 7586 TGCTTTTGCACCAATAGGTTTCATGTTACATTAATTTGAACTTGCTCGGTCTGTTCAATT 7527 Query 180392 CCGTCCTTACAATGCTATTGCATTCTCTGGTCCTATCGCTGTATTTGTCAGCGTATTTCT 180451 || |||| ||||| || | |||||| |||| || ||| | || | | | |||| | Sbjct 7526 ACGATCTTATAATGCAATCTCGTTCTCTAGTCCAATTGCTATTTTGTTTATC-TATTCTT 7468 Query 180452 CATCTACCCACTGGGTCAGTCCAGTTGGTTCTTTGCTCCCTCTTTTGGGGTAGCAGCAAT 180511 || || ||||| || || || ||||||||||||| | ||| | ||||| | || Sbjct 7467 TATTTATCCACTCGGGCAATCTGGTTGGTTCTTTGCATCGAGTTTCAGCATAGCAACGAT 7408 Query 180512 CTTTAGATTCCTACTCTTTCTTC-AGGGTTTCCACAACTGGACCCTCAACCCCTTCCATA 180570 ||||||||| | | ||||||| | |||| || || |||| | ||||| || |||| Sbjct 7407 ATTTAGATTCATCAT-TTTCTTCCAATGTTTACATAATTGGAGGTTGAACCCATTTCATA 7349 Query 180571 TGATGGGAGTTG 180582 |||||||||||| Sbjct 7348 TGATGGGAGTTG 7337 >seq40677 Length=4500 Score = 93.3 bits (102), Expect = 5e-14 Identities = 113/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 179188 TATATGGGACGTGAGTGGGAACTTTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTT 179247 |||||||| ||||||||||||||| || || ||| ||||||||||| ||||| |||| Sbjct 154 TATATGGGTCGTGAGTGGGAACTTAGTTTCCATCTGGGTATGCGTCCTTGGATTGCTGTT 95 Query 179248 GCATACTCTGCACCAGTCGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAA 179307 ||||| || | | || || ||||| | || ||| ||| | | || ||| | || ||| Sbjct 94 GCATATTCAACTCATGTTGCAGCTGCTACTGTAGTTTTCTTGATTTACCCTATTGGCCAA 35 Query 179308 GGTTCTTTCTCTGATGCTATGCCTCTTGGTATCT 179341 || | ||||||| ||| ||| | || |||| Sbjct 34 GGAAGCTCTTCTGATGGTATACCTTTAGGAATCT 1 >seq398894 Length=318 Score = 84.2 bits (92), Expect = 3e-11 Identities = 128/180 (71%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 178861 TTCTGCGAGTGGGTAACGTCCACCAACAATCGTTTGTATGTTGGTTGGTTCGGTGTGCTG 178920 |||||| | ||| |||| ||| | |||| | | || | || ||||||||||| || Sbjct 140 TTCTGCAACTGGATAACTAGCACTGAAAATCATCTTTACATCGGATGGTTCGGTGTTTTG 199 Query 178921 ATGATTCCTACGTTGCTTGCTGCAACTATCTGT-TTCATCGTTGCTTTCGTAGCAGCACC 178979 ||||| ||||| || | | ||||| || || || || | || ||| | || || || Sbjct 200 ATGATCCCTACCTTATTGAGTACAACT-TCCGTATTTATTATCGCCTTCATCGCTGCCCC 258 Query 178980 TCCCGTCGATATTGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGAAACAA 179039 ||| || |||||||| || || ||||| || || ||||||| | | ||||||||||| Sbjct 259 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 318 >seq337787 Length=336 Score = 82.4 bits (90), Expect = 9e-11 Identities = 151/219 (69%), Gaps = 3/219 (1%) Strand=Plus/Plus Query 178852 TGGGAACAGTTCTGCGAGTGGGTAACGTCCACCAACAATCGTTTGTATGTTGGTTGGTTC 178911 ||||| || |||||| | ||| |||| ||| | |||||| | || | || || ||| Sbjct 88 TGGGATCACTTCTGCAACTGGATAACTAGCACTGAAAATCGTCTTTACATCGGATGATTC 147 Query 178912 GGTGTGCTGATGATTCCTACGTTGCTTGCTGCAAC-TATCTGTTTCATCGTTGCTTTCGT 178970 ||||| |||||| ||||| || | ||||||| ||| | ||| || | | ||| | Sbjct 148 GGTGTTTTGATGACCCCTACCTTATTGACTGCAACCTATGTATTT-ATTATCTCCTTCAT 206 Query 178971 AGCAGCACCTCCCGTCGATATTGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTA 179030 | || ||||| | |||||||| || || ||||| | || || |||| | | || Sbjct 207 CACTGCCCCTCCACTAGATATTGATGGTATTCGTGAGCATGTT-CTTGTTCTTTACTTTA 265 Query 179031 TGGAAACAACATCATCTCTGGTGCTGTTGTCCCAAGTTC 179069 ||||||||| || |||||||| || |||| | ||| Sbjct 266 TGGAAACAATATTNNNNCTGGTGCTATTATCCCCACTTC 304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 598262567492160