Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq4015 98.7 1e-15 seq542047 89.7 7e-13 >seq4015 Length=6327 Score = 98.7 bits (108), Expect = 1e-15 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 ||| || ||||||| || | ||||| | ||| |||| | | ||| |||| ||| || Sbjct 1489 TCCGCCTTGATCTACATAACGAGCAGTATCATTGAAGACACGTAACATAGGAACAATCCC 1430 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||| || | || ||||| || |||||| || || | || ||||| || || ||| Sbjct 1429 ATTGGACGTCCCGTTTGTCCCTCGAATATAGCTCCCAGTAGCACGAATGTTGTGAACAGA 1370 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| |||||||| || ||| || | |||||| |||| || ||||| || Sbjct 1369 GACACCAATTCCTCCAGCAGATTTGCTTATGACAGCACACTCCTTCAGAGTATCATAGAT 1310 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 ||||| |||||||||||| ||||| | ||| |||||||| Sbjct 1309 TCCCTCGATGCTATCATCTTTCATGCAGATAAGGAAACAGCT 1268 >seq542047 Length=2783 Score = 89.7 bits (98), Expect = 7e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||||||||| || || |||||||| || | || | ||||| || || ||||| Sbjct 1750 GCAGGCGAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAG 1691 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAA 39735 || ||||| || || ||||| |||||||| || |||||| || || || || ||||| Sbjct 1690 GCCCGGCATGAGGCCCCGCTTCTTGAGCCAGAAGATGGCACAGAAGGAGCCCGAGAAGAA 1631 Query 39736 GATGCCTTCTAC 39747 |||||| || || Sbjct 1630 GATGCCCTCAAC 1619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 673327694283480