Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq542047 109 7e-19 seq1482391 96.9 4e-15 seq4698 96.9 4e-15 >seq542047 Length=2783 Score = 109 bits (120), Expect = 7e-19 Identities = 304/456 (67%), Gaps = 18/456 (4%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || ||||| |||||||| |||||||||||||| || | || ||| ||||| Sbjct 2034 TACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCATC 1975 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATGG-GTGGCACCCCAACTTGTTTGAGGAGACG 122489 |||| || || || | ||||| | | || ||| |||| | | ||| || || Sbjct 1974 CAGTCGAACGGGTTGGTGGCGTTGTAGAGCTTGTTGCAGCCCAGCGCCAT-GAGCAGGCG 1916 Query 122490 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTACA 122549 || | || |||| ||||||| | ||| || |||||| |||| ||| || Sbjct 1915 GTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCGCA 1856 Query 122550 TGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTG 122609 ||||| ||||| ||| ||| | |||| || || || ||||| ||||| || Sbjct 1855 GGGGAGCGCGTCACAGACAAACTCCCTCTCTATGTCCACGGCCTCAGAGACGATCTCGAA 1796 Query 122610 GATAGTTTCGGTAGTGGGTCTA--TTAC---GCA--AAGTCTT-GAAGAGCTCCACGGCA 122661 || ||| | | | || | || | ||| | ||| | || ||| || ||| Sbjct 1795 GACG----CGGGACTCG-TCGAGCTTGCCGCGCAGGATGTCGTAGAGGAGG--CA-GGCG 1744 Query 122662 AACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGC 122721 || || ||| || ||||| || ||||| || || || || |||||| || || ||| Sbjct 1743 AAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGC 1684 Query 122722 ATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCC 122781 ||||| ||||||||||| | ||| | || || ||||| || || ||||||||||| ||| Sbjct 1683 ATGAGGCCCCGCTTCTTGAGCCAGAAGATGGCACAGAAGGAGCCCGAGAAGAAGATGCCC 1624 Query 122782 TCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAG 122817 || || || || || || | | ||| ||||||||| Sbjct 1623 TCAACGCAGGCGAAGGCGACGATGCGCTCGGCGAAG 1588 >seq1482391 Length=7374 Score = 96.9 bits (106), Expect = 4e-15 Identities = 194/287 (68%), Gaps = 12/287 (4%) Strand=Plus/Minus Query 11453 TCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGCA 11512 ||||| || || || | ||| | || ||| | ||| || | | || ||||| ||| Sbjct 3965 TCAAAGCGTCCAGGTCTAAGCAAAGCAGAATCCAAGATGTCAGCCCTGTTGGTGGCAGCA 3906 Query 11513 ATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAATT 11572 | ||| | |||||||| | ||||| ||||||||||| || |||| ||||| | Sbjct 3905 ACAACAATGATGCCAGTGTTGCCCTCAAAACCATCCATCTCAGTCAGTAGCTGATTGAGA 3846 Query 11573 GTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCAC-TG-----CGTTGCTTGCCC 11626 || || || || ||||| || | |||||| || || | |||| | || Sbjct 3845 GTCTGCTCCCTTTCATCGTTCCC------ACCACCGATACCTGTTCCTCTTTGCCTTCCA 3792 Query 11627 ACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 11686 || |||||||| ||||||| || || || || || ||| || ||| | | ||| Sbjct 3791 ACAGCATCAATTTCATCAACAAACACGATGCAAGGAGCATTCTCCTTGGCCTTCTTGAAG 3732 Query 11687 AGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAA 11733 ||||| ||||| | |||||| |||||||||||||||||||| || Sbjct 3731 AGATCACGAACACGGGAGGCACCAACACCAACAAACATCTCCACGAA 3685 >seq4698 Length=7391 Score = 96.9 bits (106), Expect = 4e-15 Identities = 213/316 (67%), Gaps = 4/316 (1%) Strand=Plus/Plus Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599 ||||| |||||||| ||||| | || |||||||| || || |||||||| || | | Sbjct 6478 AAGCCGTCCATCTCTGTGAGCAGCTGGTTAATTGTCTGCTCCCTCTCATCGTTCCCCC-C 6536 Query 11600 ATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATAC 11657 | ||| || |||| || ||| | || || || ||||||||||| |||||||| || | Sbjct 6537 AC-CCATGCCGGCACCACGCTGCCTCCCGACGGCGTCAATCTCATCGATGAAGACGATGC 6595 Query 11658 ATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAA 11717 | || || | ||| | || ||||| || | ||||| || ||||| || | Sbjct 6596 AGGGCGCCTTGGCCTTGGCCTTCTCGAAGAGGTCCCTGACCCTGGACGCGCCCACGCCGA 6655 Query 11718 CAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCG 11777 | || | ||| || || | | || | ||| || ||| || || | || || | Sbjct 6656 CGAAGAGCTCGACGAACTCAGACGCGGCGCAGGAGAAGAAGGGCACCCCGGCCTCCCCGG 6715 Query 11778 CGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTC 11837 ||| ||| | |||||| || ||||| || || || ||| || |||| ||| ||| Sbjct 6716 CGACGGCCCTGGCGAGCAGCGTCTTCCCGGTCCCGGGCGGGCCGACGAGCAGGCAGCCCT 6775 Query 11838 GGGGGATCTTGGCACC 11853 |||||||||||| || Sbjct 6776 TGGGGATCTTGGCCCC 6791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615614967367200