Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq542047 159 4e-34 seq1489163 116 4e-21 seq1482391 93.3 5e-14 >seq542047 Length=2783 Score = 159 bits (176), Expect = 4e-34 Identities = 316/455 (69%), Gaps = 16/455 (4%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || || ||||||||||||||||| ||||| || | || ||| |||||| Sbjct 2034 TACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCATC 1975 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAA--TTGCTGGCACTCCAATCTGTTTGAGGAGAC 129845 | || || ||||| | | ||| | | ||| || || ||| | |||| || | Sbjct 1974 CAGTCGAACGGGTTGGTGGCGTTGTAGAGCTTGTTG-CAGCCCAG-CGCCATGAGCAGGC 1917 Query 129846 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTAC 129905 | || | |||| |||| ||||||| ||| ||| |||||| |||| ||| | Sbjct 1916 GGTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCGC 1857 Query 129906 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGT 129965 | ||||||||||| ||| ||| || |||| |||||||| || || ||||| || Sbjct 1856 AGGGGAGCGCGTCACAGACAAACTCCCTCTCTATGTCCACGGCCTCAGAGACGATCTCGA 1797 Query 129966 GAATG---GTCTCCGTGCCAGGTCTATTGCGCA--AAGTCTT-GAAGAGTTCCACGGCAA 130019 | | | ||| || | || | | ||||| | ||| | || ||| || ||| | Sbjct 1796 AGACGCGGGACTC-GT-CGAGCT-TGCCGCGCAGGATGTCGTAGAGGAGG--CA-GGCGA 1743 Query 130020 ACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCA 130079 | || ||| || |||||||| ||||||||||| || || |||||| || || |||| Sbjct 1742 AGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCA 1683 Query 130080 TGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCT 130139 |||| ||||||||||| | |||||| || ||||| || ||||| ||||||||||| |||| Sbjct 1682 TGAGGCCCCGCTTCTTGAGCCAGAAGATGGCACAGAAGGAGCCCGAGAAGAAGATGCCCT 1623 Query 130140 CCACACACGCGAACGCAAAGAGACGCTCAGCAAAG 130174 | || || ||||| || | || ||||| || ||| Sbjct 1622 CAACGCAGGCGAAGGCGACGATGCGCTCGGCGAAG 1588 >seq1489163 Length=4104 Score = 116 bits (128), Expect = 4e-21 Identities = 433/664 (65%), Gaps = 16/664 (2%) Strand=Plus/Minus Query 13886 CGGACAGCGCGGATGGCACACTCATTGAGGAGGTTCGCCAAGTCGGCACCAGAGAAGCCC 13945 ||| | ||| ||||||| ||| || | |||||| || | |||||| || ||| || Sbjct 1209 CGGCCGGCGAGGATGGCGGCCTCGTTCATGAGGTTGGCGAGGTCGGCGCCGCTGAACCCG 1150 Query 13946 GTCGTTTGCTTTGCGATGGCGTGTAGCTTCACATCGTCAGCCAACTTCTTGTCTCGGGC- 14004 | ||| || | || | || || ||| ||| ||| |||||||| | | || Sbjct 1149 GGCGTGCGCATGGCCACCACGCTGAGGGACACGTCGGGGTCCAGCTTCTTGT-TGGCGCT 1091 Query 14005 GTGGACACCCAAAATCTTCTCGCGACCGCGCACACTGGGTAGGGACACGGTGATCTTACG 14064 ||| || | | |||| |||||| |||||||| ||| || |||| | || || Sbjct 1090 GTGCACCCGGAGGATCTCCTCGCGGCCGCGCACGTCGGGCAGCCCGACGGACACCTGCCG 1031 Query 14065 ATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGC 14124 || ||||| || |||||||| || ||| |||| ||||| || |||||||| || || Sbjct 1030 GTCGAAGCGGCCCGGGCGGAGCAGCGCGGCGTCGAGGATCTCCGGCCGGTTCGTGGCGGC 971 Query 14125 GATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGAT 14184 |||||| | || ||| | || ||||| |||||||| || | || || || | Sbjct 970 GATGACGATGACGCCGCTGTCACCGCGGAAGCCGTCCATCTCGGTGAGCAGCTGGTTCAG 911 Query 14185 GGTTTGTTCGCGTTCATCATT-CGCAGGCATACCACCCGCACTGCGTTGCTTACCGACGG 14243 || || || | || || || | | || | |||| | ||| ||| ||||||| Sbjct 910 CGTCTGCTCCCTCTCGTCGTTACCCCCGCCGATG-CCCGTGCCGCGCTGCCGGCCGACGG 852 Query 14244 CGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTCAAAGATAT 14303 |||| || || |||||||| || | || || || || ||| || || | | Sbjct 851 CGTCGATCTCGTCGATGAACACCAGGCACGGCGCGTTGTCCTTGGCCTTGTCGAACAGGT 792 Query 14304 CTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAACATT 14363 | ||||| | | || || || ||||| |||||||| | || | | |||| || Sbjct 791 CCCGCACCCGCGACGCGCCCACGCCCACGAACATCTCGATGAACTCCGACCCGGA-CAGC 733 Query 14364 G-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTC 14422 | || |||||| ||| | || |||||||| || ||| || || |||||||||||| Sbjct 732 GAGAAGAAGGGCACGCCGGCCTCGCCCGCGATCGCCTTGGCCAGCAGCGTCTTCCCCGTC 673 Query 14423 CCTGGTTTCCCTGCGAGAAGGGCACCACGT--GGGATCCT-GGCACCACTGCCAAAGT-A 14478 || || || || || | ||||| | | |||||||| | | |||| ||| || | Sbjct 672 CCCGGCGGGCCGGCCAGCA--GCACCCCCTTGGGGATCCTCGCCCCCACCGCC---GTGA 618 Query 14479 GCGT-TCAGGTTGTTTAAGGAAGTCCACGATTTCTTCCAATTCATCCTTCGCGGCGTCGA 14537 | | || || || ||||| | |||||| || | || || | |||||| |||| | Sbjct 617 ACTTCTCCTGTGACTTGAGGAACTGCACGATCTCCTGGAAGTCCTGCTTCGCCTCGTCCA 558 Query 14538 TGCC 14541 ||| Sbjct 557 CGCC 554 >seq1482391 Length=7374 Score = 93.3 bits (102), Expect = 5e-14 Identities = 166/239 (69%), Gaps = 10/239 (4%) Strand=Plus/Minus Query 14113 GTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAA 14172 ||| || || || | |||| |||||| || | | ||||| |||||||||||||||| Sbjct 3918 GTTGGTGGCAGCAACAACAATGATGCCAGTGTTGCCCTCAAAACCATCCATCTCAGTCAG 3859 Query 14173 GAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATACC---ACCCGCACTGCG 14229 || ||||||| || || || | |||||| ||| || ||| ||| | | | Sbjct 3858 TAGCTGATTGAGAGTCTGCTCCCTTTCATCGTTCCCA---CCACCGATACCTGTTCCTCT 3802 Query 14230 TTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGC 14289 |||| | || || || ||||||||||| | || ||||| || || ||| || ||| Sbjct 3801 TTGCCTTCCAACAGCATCAATTTCATCAACAAACACGATGCAAGGAGCATTCTCCTTGGC 3742 Query 14290 AACTTC--AAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAA 14346 |||| |||| ||| || || | |||||| ||||| |||||||||||||| || Sbjct 3741 --CTTCTTGAAGAGATCACGAACACGGGAGGCACCAACACCAACAAACATCTCCACGAA 3685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 606207908938920