Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq542047 141 1e-28 seq1482391 107 2e-18 seq4698 95.1 1e-14 >seq542047 Length=2783 Score = 141 bits (156), Expect = 1e-28 Identities = 120/148 (81%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856 ||| || ||||| || |||| || || || |||||||| ||||||||||| || ||||| Sbjct 1588 CTTCGCCGAGCGCATCGTCGCCTTCGCCTGCGTTGAGGGCATCTTCTTCTCGGGCTCCTT 1647 Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916 ||| || || | |||||||||||||| || |||||||| || ||| |||||||||||| Sbjct 1648 CTGTGCCATCTTCTGGCTCAAGAAGCGGGGCCTCATGCCGGGCCTCACCTTCTCCAACGA 1707 Query 94917 GCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||| ||||| || |||||||| || ||| Sbjct 1708 GCTCATCTCCCGCGACGAGGGCCTGCAC 1735 >seq1482391 Length=7374 Score = 107 bits (118), Expect = 2e-18 Identities = 200/289 (69%), Gaps = 16/289 (6%) Strand=Plus/Minus Query 9527 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9586 |||||||| || || | ||| | || ||| | ||| ||| | | || || || || Sbjct 3965 TCAAAGCGTCCAGGTCTAAGCAAAGCAGAATCCAAGATGTCAGCCCTGTTGGTGGCAGCA 3906 Query 9587 ATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATA 9646 | |||| || || || | ||||||||||||||||| |||| || || || | | Sbjct 3905 ACAACAATGATGCCAGTGTTGCCCTCAAAACCATCCATCTCAGTCAGTAGCTGATTGAGA 3846 Query 9647 GTTTGTTCCCGTTCATCATTCGCTGGCATACCACC-AGCACTG-----CGTTGCTTTCCC 9700 || || |||| |||||| ||| | |||||| | ||| | |||| |||| Sbjct 3845 GTCTGCTCCCTTTCATCGTTCCC------ACCACCGATACCTGTTCCTCTTTGCCTTCCA 3792 Query 9701 ACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTC--AA 9758 || |||||||| ||||||| || |||||||| || ||| || | | | |||| | Sbjct 3791 ACAGCATCAATTTCATCAACAAACACGATGCAAGGAGCATTCTC-CTTG-GCCTTCTTGA 3734 Query 9759 AGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAA 9807 ||||||| || ||||| ||| || |||||||||||||||||||| || Sbjct 3733 AGAGATCACGAACACGGGAGGCACCAACACCAACAAACATCTCCACGAA 3685 >seq4698 Length=7391 Score = 95.1 bits (104), Expect = 1e-14 Identities = 274/413 (66%), Gaps = 18/413 (4%) Strand=Plus/Plus Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583 |||||||| | ||||| || || ||||| || || | ||| | || |||||| Sbjct 6388 CGATCAAACCTCCCTGGCCGCAGAAGCGCCGAGTCGAGCACATCCGGCCTGTTGGTCGCG 6447 Query 9584 GCGATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGT 9641 |||| || | | ||| |||||| | || || ||||||||||| | || |||| Sbjct 6448 GCGAGCACGATGACACCGCTGTTTCCAGAG--AAGCCGTCCATCTCTGTGAGCAGCTGGT 6505 Query 9642 TAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCC 9699 |||| || || |||| ||||| ||| | || ||| || |||| || ||| | || Sbjct 6506 TAATTGTCTGCTCCCTCTCATCGTTCCCCC-CAC-CCATGCCGGCACCACGCTGCCTCCC 6563 Query 9700 CACGGCATCAATCTCATCAATGAAGACGATGCATGG----TTGATTTTCGCGAGCGACTT 9755 ||||| ||||||||||| |||||||||||||| || ||| || || | | Sbjct 6564 GACGGCGTCAATCTCATCGATGAAGACGATGCAGGGCGCCTTGGCCTTGGCCTTC----T 6619 Query 9756 CAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGG 9815 | ||||| |||| || | |||||||| || || || | ||| || || | | | Sbjct 6620 CGAAGAGGTCCCTGACCCTGGACGCGCCCACGCCGACGAAGAGCTCGACGAACTCAGACG 6679 Query 9816 CGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCT 9875 ||| || || |||||| || | || || || | ||| | |||||| || |||| Sbjct 6680 CGGCGCAGGAGAAGAAGGGCACCCCGGCCTCCCCGGCGACGGCCCTGGCGAGCAGCGTCT 6739 Query 9876 TACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGT-GGAATCTTGGCGCC 9927 | || || || ||| || |||| | |||| | | | || |||||||| || Sbjct 6740 TCCCGGTCCCGGGCGGGCCGACGAGCA-GGCAGCCCTTGGGGATCTTGGCCCC 6791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571728953872680