Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_028104.1 Length=73689 Score E Sequences producing significant alignments: (Bits) Value seq53309 82.4 4e-11 >seq53309 Length=3856 Score = 82.4 bits (90), Expect = 4e-11 Identities = 108/147 (73%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 65090 GTTCCAAACTGACCATTTGGCATTAATAAATTAATATTGTTTGAACCAATAAAATTCTGA 65149 || |||||||| ||| ||| || | ||||||||| || |||| ||||| |||| Sbjct 1522 GTACCAAACTGGCCACGGGGCTCCAAAAGATTAATATTATTGCTGCCAACAAAATCCTGA 1463 Query 65150 GCCATTCCGATAATTGCTGCAT-TTAAACTCGCTTCACCGTGATGATATCCTGAATGTTC 65208 |||||||| ||||||| ||| | || |||| ||||| || || ||| |||| || || Sbjct 1462 GCCATTCCTATAATTG-TGCTTGCTAGACTCTGCTCACCATGGTGGTATGCTGAGTGCTC 1404 Query 65209 AGAGACATATCCACTAAATTGAGCAAC 65235 || ||||| ||| |||| || || || Sbjct 1403 TGACACATAACCAATAAACTGTGCCAC 1377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 231136783898550