Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq542047 219 5e-52 >seq542047 Length=2783 Score = 219 bits (242), Expect = 5e-52 Identities = 588/876 (67%), Gaps = 35/876 (4%) Strand=Plus/Plus Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGG 59621 || || || |||| |||| | | |||| | || ||||| ||| | | || |||||| Sbjct 1175 TTCCCCATCCGGTTCCCGCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCCTTCTGG 1234 Query 59622 TCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAG---CTCAATTAC 59678 ||| ||||||| | |||||| || ||| | ||||||| | ||| || Sbjct 1235 ACCGCCGAGGAGGTGGACCTCTCCTCCGACGCCCGCCACTGGGACACGACGCTCTCCAAC 1294 Query 59679 GACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTG 59738 ||||||| || |||||| || || ||||||||||| || || || || ||| Sbjct 1295 GACGAGCGCCACTTCATCTCCCACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTG 1354 Query 59739 ATGGAAAATATAGAC---ATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCG 59795 | || || | | | | | | | ||| || || ||| | ||||||||| || | Sbjct 1355 CTCGAGAACCTCGCCTCCAGGTTCATGTCC---GACGTGCAGGTCGCCGAGGCCAGGGCC 1411 Query 59796 TTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGAT 59854 ||||||| | ||| ||| || |||| ||||||||||||| |||||| || | || Sbjct 1412 TTCTACGGCTTCCAGATCGC-CATCGAGAACATCCACTCCGAGATGTACTCCCTGCTCAT 1470 Query 59855 CGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACGTC 59914 ||| | | || || | ||||||| | || ||||| ||||| || || Sbjct 1471 CGAGACCTACATCCGCGACGACGTCGAGAAGGACCGCCTCTTCCGCGCCATCGACACCAT 1530 Query 59915 CCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GA-GTCCTGGAGCATCA 59972 ||| || || | || || || |||||| | | ||||| || | | ||||| Sbjct 1531 CCCAGCCGTGCGCCGCAAGGCCGACTGGGCCCTTCGCTGGATCGACGGCGGGGAGCGC-- 1588 Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTC 60032 || || | || || | || || || ||||| || || ||||||||||| ||||| ||| Sbjct 1589 TTCGCCGAGCGCATCGTCGCCTTCGCCTGCGTTGAGGGCATCTTCTTCTCGGGCTCCTTC 1648 Query 60033 TGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAG 60092 ||||| || ||||||||||| ||||| ||||||||||||||||| | |||||||||||| Sbjct 1649 TGTGCCATCTTCTGGCTCAAGAAGCGGGGCCTCATGCCGGGCCTCACCTTCTCCAACGAG 1708 Query 60093 CTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGAC-GCTCTATTCACA-CC 60150 || || ||||| ||||||||||| || || || || || | ||||| ||| || Sbjct 1709 CTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGC-CTGCCTCCTCTA-CGACATCC 1766 Query 60151 T-ATTGGAAAAAT-GCCCTTCCAAGGATATTCACAAGATTGT-TCAGTGGGCTTGTGAAG 60207 | || || | | | | | | || | |||| || || | || | || || Sbjct 1767 TGCGCGGCAAGCTCGACGAGTCCCGCGTCTT--CGAGATCGTCTCTGAGGCCGTG-GACA 1823 Query 60208 TGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAG 60267 | ||||| ||||| || || ||||| || ||| ||| | || ||| ||| | Sbjct 1824 TAGAGAGGGAGTTTGTCTGTGACGCGCTCCCCTGCGCGCTCGTCGGCATGAACGGCGACC 1883 Query 60268 AAATGACGCAGTACATTCAGTTTGTCGCGGACCGC---CTCATGGCCCAGTTTGGAGAAG 60324 |||| |||||||| |||| ||||| |||||| |||||||| | ||| | | Sbjct 1884 TCATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCATGGCGC----TGG-GCTG 1938 Query 60325 GACCAA--TTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGG 60382 | ||| | ||| || | ||||| ||||||||||||||| ||||||| || | || Sbjct 1939 CAACAAGCTCTACAACGCCACCAACCCGTTCGACTGGATGGAGCTCATCTCGCTGCAGGG 1998 Query 60383 GAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 |||||||||||||| |||||||| ||||| || || Sbjct 1999 CAAGACCAACTTCTTCGAGAAGCGCGTCGGCGAGTA 2034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 537679731052080