Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq68655 145 9e-30 seq539347 129 7e-25 seq542539 102 1e-16 seq121670 93.3 5e-14 seq43380 84.2 3e-11 >seq68655 Length=5599 Score = 145 bits (160), Expect = 9e-30 Identities = 178/243 (73%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 176455 TGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCA 176514 |||||||||| || | | || |||||||||||||| ||||||||| || || | Sbjct 731 TGGGAACTTAATTTCCACATGGGTATGCGTCCTTGGATTGATGTTGCATATTCAGCTCAT 790 Query 176515 GTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCTTTCTCTGAT 176574 || | || | | || ||||| | | || || | ||| ||| | || | |||| Sbjct 791 GTTGCAGCTACTACTGCTATTTTCTTGATTTACCCTATTGGTTAAGTAAGCTTTTTTGAT 850 Query 176575 GGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAAGCAGAGCAC 176634 ||||||||| | || || || ||||| |||||| ||||| |||||||||| ||||||||| Sbjct 851 GGTATGCCTTTAGGAATCTCTGGTACTTTCAACATTATGATTGTATTCCAGGCAGAGCAC 910 Query 176635 AACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGTGGATCTCTT 176694 ||||| || ||||| |||||||| ||| | || |||| ||||| || || || || || Sbjct 911 AACATCCTTATGCATCCATTCCACATGTTAGGTATAGCTGGTGTATTCGGCGGTTCCCTA 970 Query 176695 TTC 176697 ||| Sbjct 971 TTC 973 >seq539347 Length=3493 Score = 129 bits (142), Expect = 7e-25 Identities = 115/143 (80%), Gaps = 1/143 (1%) Strand=Plus/Plus Query 176569 TCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAAGCA 176628 ||||||||||||||| | || || || ||||| |||||||||||| |||||||||| ||| Sbjct 1 TCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCA 60 Query 176629 GAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGTGGA 176688 ||||||||||| || ||||| |||||||| ||| | || ||||| |||| || || || Sbjct 61 GAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAGC-TGTGTATTCGGCGGT 119 Query 176689 TCTCTTTTCTCAGCAATGCACGG 176711 | || ||| | || ||||| || Sbjct 120 TTCCTATTCACTGCTATGCATGG 142 >seq542539 Length=11310 Score = 102 bits (112), Expect = 1e-16 Identities = 106/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 176962 TTCAACTTCAACCAGTCTGTCTTAGACAACTCTGGTAAAGTGATTCCTACATGGGGAGAT 177021 ||||| ||||| || ||||| | || | | ||| | ||| ||| |||| ||| Sbjct 7093 TTCAATTTCAATCAATCTGTAGTTGATAGTTAAGGTCGCATTATTGATACTTGGGCTGAT 7034 Query 177022 ATCCTTAACCGTGCAAACCTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTC 177081 ||| | |||||||| ||||||||| ||||||||||||| | |||||||||||||||||| Sbjct 7033 ATCATCAACCGTGCTAACCTTGGTGTGGAAGTTATGCATAAACGTAATGCTCACAACTTC 6974 Query 177082 CCACTTGACCTTGCTGCTG 177100 || || ||| | |||| || Sbjct 6973 CCTCTAGACTTAGCTGATG 6955 >seq121670 Length=2540 Score = 93.3 bits (102), Expect = 5e-14 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 176995 GGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTATGGAAGTT 177054 ||| | || ||| ||| |||| |||| | |||||| ||| |||||| |||||||||| Sbjct 381 GGTCATGTAATTAATACTTGGGCTGATAACATTAACCATGCTAACCTTCGTATGGAAGTA 322 Query 177055 ATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCTG 177100 ||||||| | |||||||||||||||||| || ||| | |||| || Sbjct 321 ATGCACGTACATAATGCTCACAACTTCCCTCTAGACTTAGCTGTTG 276 >seq43380 Length=4142 Score = 84.2 bits (92), Expect = 3e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 177031 CGTGCAAACCTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGAC 177090 ||||| ||||||||||||||||| ||||||| |||||||||||||||||||| || ||| Sbjct 2498 CGTGCTAACCTTGGTATGGAAGTAATGCACGGACGTAATGCTCACAACTTCCCTCTAGAC 2439 Query 177091 CTTG 177094 ||| Sbjct 2438 TTTG 2435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591562508538240