Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq122391 120 2e-22 seq529058 113 3e-20 seq1486945 102 5e-17 seq584639 98.7 7e-16 seq108278 93.3 3e-14 seq558297 91.5 1e-13 seq244586 89.7 3e-13 seq1545881 86.0 4e-12 seq549981 86.0 4e-12 seq46261 86.0 4e-12 seq43011 84.2 1e-11 >seq122391 Length=5611 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || |||||||| || || || |||||||| || ||||| | Sbjct 2712 ATGCAGATTTTTGTCAAGACCCTCACCGGCAAGACTATCACTCTTGAGGTTGAGAGTTCA 2771 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| ||||| | || | || ||||| || || | || || || || Sbjct 2772 GATACCATTGACAATGTTAAAGCCAAGA-TTCAGGACAAGGAGGGCATTCCTCCGGACCA 2830 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | | || ||||| || |||||||||||||| | ||||| || | |||||||| Sbjct 2831 ACAGAGGCTTATCTTTGCTGGAAAACAACTGGAAGATGGCCGCACCTTGGCTGATTACAA 2890 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| || || |||||||| | || | ||| | ||||| |||| || Sbjct 2891 CATTCAGAAGGAGTCCACCCTCCACCTTGTTCTTCGGTTGAGAGGTGG 2938 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || || || || || || || || || || ||||| | | Sbjct 3168 ATGCAGATCTTTGTAAAGACACTAACTGGGAAGACCATTACACTTGAGGTTGAGAGCTCC 3227 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| |||||||| | || | | ||||| || ||| | ||||| || || Sbjct 3228 GACACCATTGATAATATTAAGGCCAAGA-TCCAGGACAAGGAGGGTATCCCGCCTGACCA 3286 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || |||||||| || || || || || | ||||| || | ||||||||| Sbjct 3287 GCAGAGGCTCATCTTTGCCGGAAAGCAGCTTGAGGATGGGCGCACATTGGCCGATTACAA 3346 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| ||||| |||||||| Sbjct 3347 CATCCAAAAGGAGTCCAC 3364 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 || |||||||| || || |||||||| || || || || ||||| || || || | | Sbjct 2940 ATACAGATTTTTGTCAAGACCCTCACTGGGAAGACCATAACTCTAGAGGTCGAGAGCTCT 2999 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | ||| | |||| | ||||| || ||| | || || || || Sbjct 3000 GACACCATTGACAATGTCAAAGCGAAAA-TCCAGGACAAGGAGGGTATCCCTCCTGACCA 3058 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| ||||| || || || || | |||||||| | |||||||| Sbjct 3059 GCAGAGGCTTATCTTTGCTGGCAAGCAGCTTGAGGATGGGCGCACTTTGGCTGATTACAA 3118 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 3119 CATTCAGAAGGAGTCTAC 3136 >seq529058 Length=7459 Score = 113 bits (124), Expect = 3e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || |||||||| || || || ||||| || || ||||| ||| || Sbjct 1121 ATGCAGATTTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTTGAGTCCTCG 1180 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || ||| ||||| || || | || || || || Sbjct 1181 GACACAATTGACAACGTGAAGGCGAAGATTCAGGACAAGGAGGGCATTCCTCCGGACCAG 1240 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || ||||||||||| || ||||| || | ||||| || | || |||||| Sbjct 1241 CAGCGCCTCATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACCTTGGCGGACTACAAC 1300 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 1301 ATCCAGAAGGAGTCTAC 1317 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || ||||| || || || ||||| || || ||||| || | Sbjct 893 ATGCAGATCTTCGTGAAGACTCTCACTGGCAAGACCATCACCCTGGAGGTTGAGTCGTCT 952 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| | || | | || || || || || || || | || || || || Sbjct 953 GACACTATCGACAACGTCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCGGACCAG 1012 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||||||||| ||||| || || | |||||| | | || |||||| Sbjct 1013 CAGCGTCTCATCTTTGCCGGCAAGCAACTTGAGGATGGACGCACCCTTGCGGACTACAAC 1072 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 1073 ATCCAGAAGGAGTCCAC 1089 >seq1486945 Length=5508 Score = 102 bits (112), Expect = 5e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || |||||||| || || || ||||| || || || || ||| || Sbjct 3217 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTCGAGTCCTCG 3276 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | | ||||| ||||| | || || || || Sbjct 3277 GACACCATTGACAATGTGAAGGCCAAGA-TCCAGGACAAGGAAGGCATTCCCCCGGACCA 3335 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || ||||||||||| ||||| || || | ||||| | | || ||||| Sbjct 3336 GCAGCGCCTGATCTTTGCCGGCAAGCAACTTGAGGATGGTCGCACCCTTGCGGACTACAA 3395 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 3396 CATCCAGAAGGAGTCCAC 3413 >seq584639 Length=1662 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || |||||||| || || || ||||| | || || || ||| || Sbjct 278 ATGCAGATTTTCGTCAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTGGAGTCCTCG 219 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | ||| || || || || || | || || || || Sbjct 218 GACACCATTGACAATGTGAAGGC-AAAGATCCAGGATAAGGAGGGCATCCCCCCGGACCA 160 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || |||||||| || || || || | ||||| | | || ||||| Sbjct 159 GCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTGGCTGACTACAA 100 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 99 CATCCAGAAGGAGTCCAC 82 >seq108278 Length=2337 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || ||||| || || || ||||| || || ||||| || | Sbjct 978 ATGCAGATCTTTGTGAAGACACTCACCGGCAAGACCATCACCCTTGAGGTTGAGTCTTCT 919 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | | || || || || | || || || || Sbjct 918 GACACCATCGACAATGTCAAGGCGAAGA-TCCAGGATAAGGAGGGCATTCCTCCGGACCA 860 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||| ||||| || || || |||| |||||| | | ||||||||| Sbjct 859 GCAGCGTCTGATCTTTGCGGGCAAGCAGCTTGAGGACGGCCGCACTCTGGCCGATTACAA 800 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 799 CATCCAGAAGGAGTCCAC 782 >seq558297 Length=3815 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| || |||||||| || || || ||||| | || || || || | Sbjct 1412 AATGCAGATTTTCGTCAAGACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGTCTTC 1471 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| | | || ||| || ||||| || || | || || || || Sbjct 1472 GGACACCATTGACAACGTGAAGGCAAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCA 1531 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || |||||||| || || || || | ||||| | | || ||||| Sbjct 1532 GCAGCGTCTGATTTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTGGCAGACTACAA 1591 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 1592 CATCCAGAAGGAGTCTAC 1609 >seq244586 Length=1852 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| ||||| |||||||| || || || ||||| || || || || || | Sbjct 85 ATGCAGATTTTTGTTAAGACCCTCACCGGCAAGACAATCACCCTTGAGGTGGAGTCGTCT 144 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | | ||||| || || |||| || || || Sbjct 145 GACACCATCGACAATGTGAAGGCCAAGA-TCCAGGACAAGGAGGGCATACCCCCGGACCA 203 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || ||||||||||| || || || || | ||||| | | || ||||| Sbjct 204 GCAGCGCCTCATCTTTGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTGGCTGACTACAA 263 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 264 CATCCAGAAGGAGTCTAC 281 >seq1545881 Length=1019 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || || ||||| || || || ||||| || || ||||| || | Sbjct 495 ATGCAGATTTTTGTCAAGACGCTCACCGGCAAGACCATCACCCTGGAGGTTGAGTCGTCC 554 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||||| || ||| | || || || || Sbjct 555 GACACCATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGTATCCCACCGGACCAG 614 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||| || || || || || || | |||||| | | || |||||| Sbjct 615 CAGCGTCTGATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACTCTGGCGGACTACAAC 674 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 675 ATCCAGAAGGAGTCCAC 691 >seq549981 Length=8207 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || |||||||| || || || ||||| || || || || || || Sbjct 7933 ATGCAAATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTGGAATCTTCG 7874 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || || ||||| || ||| | || || || || Sbjct 7873 GACACCATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 7814 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || |||||||| || || || || || | ||||| | | ||||||||| Sbjct 7813 CAGCGCCTGATCTTTGCCGGTAAGCAGCTCGAGGATGGTCGCACCCTTGCGGATTACAAC 7754 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 7753 ATTCAGAAGGAGTCTAC 7737 >seq46261 Length=4898 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || ||||| || || || ||||| || || || || ||| | Sbjct 687 ATGCAGATCTTTGTGAAGACGCTCACCGGCAAGACCATCACACTTGAGGTCGAGTCCTCT 628 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | | || || || ||| | || || || || Sbjct 627 GACACAATTGACAATGTCAAGGCCAAGA-TCCAGGATAAGGAGGGTATCCCTCCGGACCA 569 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| ||||| || || || || | || || ||| |||||||| Sbjct 568 GCAGAGACTCATCTTTGCTGGCAAGCAGCTTGAGGATGGGCGGACACTAGCTGATTACAA 509 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| || ||||||||||| | || || ||| Sbjct 508 CATCCAGAAAGAGTCCACCCTCCACTTGGTT 478 >seq43011 Length=8384 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || |||||||| || || || ||||| || || ||||| | | Sbjct 336 ATGCAGATTTTTGTGAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTTGAGAGCTCT 395 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || || |||| | || || ||||| || || | || || || || Sbjct 396 GACACCATCGACAACGTTAAGGC-CAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCA 454 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || |||||||| || || ||||| || | ||||| | | || || || Sbjct 455 GCAGCGTCTGATCTTTGCCGGAAAGCAGCTGGAGGATGGCCGCACCCTTGCGGACTATAA 514 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 515 CATCCAGAAGGAGTCCAC 532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 331493770667156