Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq68655 178 2e-39 seq539347 134 2e-26 seq507140 125 9e-24 seq216476 93.3 5e-14 seq542539 91.5 2e-13 seq1291308 86.0 8e-12 seq40677 84.2 3e-11 seq428484 82.4 9e-11 >seq68655 Length=5599 Score = 178 bits (196), Expect = 2e-39 Identities = 193/256 (75%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 183529 GGTCGTGAGTGGGAATTGTCTTACCGTCTCGGTATGCGTCCTTGGATCTGTGTTGCTTAT 183588 ||||||||||||||| | || || | ||||||||||||||||| |||||| ||| Sbjct 722 GGTCGTGAGTGGGAACTTAATTTCCACATGGGTATGCGTCCTTGGATTGATGTTGCATAT 781 Query 183589 AGCGCACCTGTTGCTGCTGCAACCGCTGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCT 183648 || | |||||| ||| | || ||| | ||| || | || ||| | ||| ||| Sbjct 782 TCAGCTCATGTTGCAGCTACTACTGCTATTTTCTTGATTTACCCTATTGGTTAAGTAAGC 841 Query 183649 TTTAGTGATGGTATGCCCCTGGGTATCAGTGGCACCTTTAACTATATGCTTGTCTTCCAA 183708 ||| |||||||||||| | || ||| ||| || || ||| |||| |||| ||||| Sbjct 842 TTTTTTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACATTATGATTGTATTCCAG 901 Query 183709 GCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGTGTCGCTGGTGTCTTCGGT 183768 ||||||||||||||||| ||||| || ||||||||| | ||| | |||||||| ||||| Sbjct 902 GCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTATAGCTGGTGTATTCGGC 961 Query 183769 GGTTCTCTGTTCAGTG 183784 ||||| || ||||||| Sbjct 962 GGTTCCCTATTCAGTG 977 >seq539347 Length=3493 Score = 134 bits (148), Expect = 2e-26 Identities = 124/156 (79%), Gaps = 1/156 (1%) Strand=Plus/Plus Query 183654 TGATGGTATGCCCCTGGGTATCAGTGGCACCTTTAACTATATGCTTGTCTTCCAAGCAGA 183713 |||||||||||| | || ||| ||| || || |||| |||| |||| ||||| ||||| Sbjct 3 TGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGA 62 Query 183714 GCACAACATCCTGATGCACCCCTTCCACATGCTGGGTGTCGCTGGTGTCTTCGGTGGTTC 183773 |||||||||||| ||||| || ||||||||| | ||||| ||| |||| ||||| |||| Sbjct 63 GCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAGCT-GTGTATTCGGCGGTTT 121 Query 183774 TCTGTTCAGTGCAATGCACGGTTCTCTGGTTACTTC 183809 || |||| ||| ||||| ||||| |||| || || Sbjct 122 CCTATTCACTGCTATGCATGGTTCCTTGGTAACCTC 157 >seq507140 Length=321 Score = 125 bits (138), Expect = 9e-24 Identities = 174/244 (71%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 186371 TGTCTTTGTTAGTGTATTCCTCATCTACCCTCTTGGACAGTCCTCATGGTTCTTCGCTCC 186430 ||| |||||| ||||||||| || || || || | || || |||||||| || || Sbjct 54 TGTTTTTGTTTCTGTATTCCTTATTTATCCACTGGTGCAATCTGGTTGGTTCTTTGCGCC 113 Query 186431 CTCCTTTGGAGTCGCAGCAATCTTTAGATTCCTGTTGTTCCTCCAAGGATTCCACAACTG 186490 ||||| || ||| | || ||| ||||| | | ||| |||||||||| || || || Sbjct 114 GAGTTTTGGCGTAGCAACGATATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTG 173 Query 186491 GACGTTGAATCCATTCCACATGATGGGTGTAGCAGGTATCCTTGGTGGTGCTCTGCTGTC 186550 ||||||||| ||||| || |||||||| || || | | | |||| |||||||| | Sbjct 174 GACGTTGAACCCATTTCATATGATGGGAGTTGCCCGAGTATTAGGTGCGGCTCTGCTATG 233 Query 186551 AGCAATCCATGGTGTTACTGTAGAAAATACTCTTTATGAAGATGGCGAACAAGCAAACAC 186610 || || ||||| | || |||||||| ||||| | ||| || || || ||||| || Sbjct 234 CGCTATTCATGGAGCGACCGTAGAAAACACTCTATTTGAGGACGGTGATGGTGCAAATAC 293 Query 186611 ATTC 186614 ||| Sbjct 294 CTTC 297 >seq216476 Length=3150 Score = 93.3 bits (102), Expect = 5e-14 Identities = 170/241 (71%), Gaps = 6/241 (2%) Strand=Plus/Minus Query 186286 TAGGTTTCATGCTGCGACAGTTTGAA-ATCAGTCG-TCTCGTAGGTATCCGTCCATACAA 186343 ||||||||||| | || || |||||| || | ||| ||| | || | || | || || Sbjct 3003 TAGGTTTCATGTTACGCCAATTTGAACATGA-TCGATCTATTTAGT-TGCGACTTTATAA 2946 Query 186344 TGCCATTGCTTTTTCTGGTCCTATCGCTG-TCTTTGTTAGTGTATTCCTCATCTACCCTC 186402 ||| || | || |||||||| || | || | |||||| |||||||| | || || | Sbjct 2945 TGCAATCCCATTCTCTGGTCCAATTGTTGTTTTTTGTTTCCGTATTCCTTCTTTATCCAC 2886 Query 186403 TTGGACAGTCCTCATGGTTCTTCGCTCCCTCCTTTGGAGTCGCAGCAATCTTTAGATTCC 186462 | || || || |||||||| | || ||||| || ||||| || ||| ||||| Sbjct 2885 TGGGGCAATCTGGTTGGTTCTTTGTGCCGAGTTTTGGTGTAGCAGCGATGTTTTGATTCA 2826 Query 186463 TGTTGTTCCTCCAAGGATTCCACAACTGGACGTTGAATCCATTCCACATGATGGGTGTAG 186522 | | || || | |||||| || || |||| |||||| ||||| || |||||||| || | Sbjct 2825 TCCT-TTTCTTCTAGGATTTCATAATTGGATGTTGAACCCATTTCATATGATGGGAGTTG 2767 Query 186523 C 186523 | Sbjct 2766 C 2766 >seq542539 Length=11310 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 184045 TTTAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTCCTGAACACCTGGGCAGAC 184104 || || ||||| || || | ||||| || ||||||| | | | || ||||| || Sbjct 7093 TTCAATTTCAATCAATCTGTAGTTGATAGTTAAGGTCGCATTATTGATACTTGGGCTGAT 7034 Query 184105 GTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATGCTCACAACTTC 184164 | ||||||||||| ||||| ||||||| ||||| | |||||||||||||||||| Sbjct 7033 ATCATCAACCGTGCTAACCTTGGTGTGGAAGTTATGCATAAACGTAATGCTCACAACTTC 6974 Query 184165 CCTCTCGACCTTGCTGCTGCTGA 184187 ||||| ||| | |||| || ||| Sbjct 6973 CCTCTAGACTTAGCTGATGTTGA 6951 >seq1291308 Length=424 Score = 86.0 bits (94), Expect = 8e-12 Identities = 125/175 (71%), Gaps = 4/175 (2%) Strand=Plus/Minus Query 183945 CAATTCTCGTTCTCTTCACTTCTTCCTTGCTGCTTGGCCAGTGGTCGGCATCTGGTTTAC 184004 ||| ||||||| | | |||| ||| ||||||||| | || || || ||| |||| || Sbjct 346 CAACTCTCGTTTTTTACACTACTTG---GCTGCTTGGTCTGTAGTAGGAATCAGGTTCAC 290 Query 184005 TGCTCTTGGTGTTAGCACTATGGCATTTAACCTGAATGGTTTTAACTTCAACCAGTCCAT 184064 | | || || |||| ||||||| || ||||| |||||||| || || ||||| || | Sbjct 289 TATT-TTAGTATTAGTACTATGGTTTTCAACCTAAATGGTTTCAATTTTAACCAATCTGT 231 Query 184065 CATTGATGGTCAAGGTCGTGTCCTGAACACCTGGGCAGACGTTCTCAACCGTGCT 184119 || || |||||||||| | | || || || | || | ||||||||||| Sbjct 230 AGTTAATAGTCAAGGTCGCATTATTAATACTTGATCTGATATCATCAACCGTGCT 176 >seq40677 Length=4500 Score = 84.2 bits (92), Expect = 3e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 183520 TGCTACATGGGTCGTGAGTGGGAATTGTCTTACCGTCTCGGTATGCGTCCTTGGATCTGT 183579 || || |||||||||||||||||| | || || ||| ||||||||||||||||| | Sbjct 157 TGGTATATGGGTCGTGAGTGGGAACTTAGTTTCCATCTGGGTATGCGTCCTTGGATTGCT 98 Query 183580 GTTGCTTATAGCGCACCTGTTGCTGCTGCAACCGCTGTCTTCCTGGTCTATCCTTTCGGT 183639 ||||| ||| | | |||||| ||||| || | || ||| || | || ||| | || Sbjct 97 GTTGCATATTCAACTCATGTTGCAGCTGCTACTGTAGTTTTCTTGATTTACCCTATTGGC 38 Query 183640 CAAGGTTCTTTTAGTGATGGTATGCC 183665 ||||| | | ||||||||| || Sbjct 37 CAAGGAAGCTCTTCTGATGGTATACC 12 >seq428484 Length=423 Score = 82.4 bits (90), Expect = 9e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 186630 ACGCAAGAAGAAGAAACCTATTCGATGGTCACTGCGAACAGATTCTGGTCACAGATCTTC 186689 || ||||| |||||||| ||||| ||||||||||| ||| | || ||||| || ||||| Sbjct 244 ACTCAAGATGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTT 303 Query 186690 GGAATTGCGTTTAGCAATAAGCGTTGGCTTCAT 186722 || |||| ||| |||||| |||||| | ||| Sbjct 304 GGTGTTGCTTTTTCCAATAAACGTTGGTTACAT 336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 609771236172840