Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq68655 174 2e-38 seq539347 131 2e-25 seq216476 116 4e-21 seq532379 111 2e-19 seq214663 107 2e-18 seq550293 105 7e-18 seq337787 98.7 1e-15 seq40677 98.7 1e-15 seq428484 95.1 1e-14 seq398894 91.5 2e-13 seq680530 89.7 6e-13 seq207681 86.0 7e-12 seq542539 84.2 2e-11 >seq68655 Length=5599 Score = 174 bits (192), Expect = 2e-38 Identities = 192/256 (75%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 164261 GGTCGTGAGTGGGAACTTTCTTACCGTCTTGGTATGCGTCCTTGGATTTGCGTAGCATAC 164320 |||||||||||||||||| || || | |||||||||||||||||| || ||||| Sbjct 722 GGTCGTGAGTGGGAACTTAATTTCCACATGGGTATGCGTCCTTGGATTGATGTTGCATAT 781 Query 164321 TCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCT 164380 || |||| ||| || || | | ||| | ||| || | || ||| | ||| ||| Sbjct 782 TCAGCTCATGTTGCAGCTACTACTGCTATTTTCTTGATTTACCCTATTGGTTAAGTAAGC 841 Query 164381 TTCTCTGATGCAATGCCTCTGGGCATCTCTGGAACCTTCAACTACATGTTGGTCTTCCAG 164440 || | ||||| |||||| | || |||||||| || |||||| ||| | || |||||| Sbjct 842 TTTTTTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACATTATGATTGTATTCCAG 901 Query 164441 GCTGAGCACAACATCCTCATGCACCCCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGC 164500 || |||||||||||||| ||||| || ||||| ||| | || |||| ||||| || ||| Sbjct 902 GCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTATAGCTGGTGTATTCGGC 961 Query 164501 GGTTCTCTGTTCAGTG 164516 ||||| || ||||||| Sbjct 962 GGTTCCCTATTCAGTG 977 >seq539347 Length=3493 Score = 131 bits (144), Expect = 2e-25 Identities = 125/159 (79%), Gaps = 1/159 (1%) Strand=Plus/Plus Query 164384 TCTGATGCAATGCCTCTGGGCATCTCTGGAACCTTCAACTACATGTTGGTCTTCCAGGCT 164443 ||||||| |||||| | || |||||||| || ||||||| ||| | || |||||||| Sbjct 1 TCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCA 60 Query 164444 GAGCACAACATCCTCATGCACCCCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGT 164503 |||||||||||||| ||||| || ||||| ||| | || ||||| |||| || |||||| Sbjct 61 GAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAGC-TGTGTATTCGGCGGT 119 Query 164504 TCTCTGTTCAGTGCAATGCACGGTTCGCTGGTTACTTCT 164542 | || |||| ||| ||||| ||||| |||| || ||| Sbjct 120 TTCCTATTCACTGCTATGCATGGTTCCTTGGTAACCTCT 158 >seq216476 Length=3150 Score = 116 bits (128), Expect = 4e-21 Identities = 181/256 (71%), Gaps = 2/256 (1%) Strand=Plus/Minus Query 165475 TTATAGGTTTCATGCTTCGCCAGTTTGAACTGGCACGACTTATCGGTATTCGTCCTTACA 165534 || ||||||||||| | ||||| ||||||| | ||| ||| | || | ||| | Sbjct 3006 TTCTAGGTTTCATGTTACGCCAATTTGAACATGATCGATCTATTTAGTTGCGACTTTATA 2947 Query 165535 ATGCTATTGCTTTCTCTGGTCCTATTGCTG-TATTCGTTAGTGTTTTTCTTATGTATCCT 165593 |||| || | ||||||||||| |||| || | || ||| || || ||| | ||||| Sbjct 2946 ATGCAATCCCATTCTCTGGTCCAATTGTTGTTTTTTGTTTCCGTATTCCTTCTTTATCCA 2887 Query 165594 CTGGGACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGGGTCGCAGCAATCTTCCGATTC 165653 ||||| ||||| |||||||| | ||| || || || ||||| || || ||||| Sbjct 2886 CTGGGGCAATCTGGTTGGTTCTTTGTGCCGAGTTTTGGTGTAGCAGCGATGTTTTGATTC 2827 Query 165654 CTGCTCTTCCTCCAAGGGTTCCATAACTGGACGCTGAATCCCTTTCACATGATGGGCGTA 165713 | || || || | ||| || ||||| |||| | |||| || ||||| |||||||| || Sbjct 2826 ATCCT-TTTCTTCTAGGATTTCATAATTGGATGTTGAACCCATTTCATATGATGGGAGTT 2768 Query 165714 GCAGGTATCTTAGGCG 165729 || || ||||||| Sbjct 2767 GCCAAAATATTAGGCG 2752 >seq532379 Length=15352 Score = 111 bits (122), Expect = 2e-19 Identities = 129/173 (75%), Gaps = 1/173 (1%) Strand=Plus/Plus Query 165183 GACCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCT 165242 ||||||||||||||||| || |||||||| || | || ||||| ||||||| | ||| Sbjct 14388 GACCGTTTCGTTTTTGTAGGATGGTCTGGCCTATTGCTCTTTCCTTGTGCTTATTTCGCT 14447 Query 165243 CTTGGGGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGGTATACTCACGGACTTGCG 165302 | ||| ||||| |||| ||||| ||||| || || ||||||||| || || | || Sbjct 14448 TTAGGGTGTTGGTTTACCGGGACAACTTTTGTAACTTTTTGGTATACCCA-TGATTGGCT 14506 Query 165303 AGTTCCTATCTTGAGGGTGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGC 165355 ||||||||| | || || || ||| | || || | ||||||||| || || Sbjct 14507 AGTTCCTATTTGGAAGGCTGTAATTTTTTAACCGCAGTAGTTTCTACCCCTGC 14559 >seq214663 Length=1678 Score = 107 bits (118), Expect = 2e-18 Identities = 175/247 (71%), Gaps = 4/247 (2%) Strand=Plus/Plus Query 163928 TTCTGTAACTGGGTAACTTCAACCGACAATCGTTTGTATGTCGGTTGGTTCGGCGTCCTG 163987 |||| |||||| ||||| | ||||||||| | || |||| ||||| | || || Sbjct 1358 TTCTACAACTGGATAACTAGCAGTGACAATCGTCTATACATCGGATGGTTTCGTGTTTTG 1417 Query 163988 ATGATTCCCTGCCTGCTGGCAG-CGACTACATGT-TTCATCATCGCCTTCATCGGTGCTC 164045 ||||| |||| ||| | | | | ||| | ||| || || ||||||||||||| || | Sbjct 1418 ATGAT-CCCTACCTTATTGACGACAACTTC-TGTATTTATTATCGCCTTCATCGCCGCCC 1475 Query 164046 CTCCTGTGGACATCGATGGCATCCGCGAACCCGTCGCTGGTTCGCTCATGTATGGAAACA 164105 || || || || ||||| || || || | || ||||||| | | || |||||| Sbjct 1476 TTCTAGTAGATATTGATGGTATTCGTGAGCTTGTTTCTGGTTCTTTACTTTACAGAAACA 1535 Query 164106 ACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCA 164165 | || | |||||||| | |||||||| ||||| || ||| | ||||||| ||||| | Sbjct 1536 ATATTACCTCTGGTGTTATTATCCCTACTTCTGCGGCGATCAGATTGCACTTGTACCCAA 1595 Query 164166 TCTGGGA 164172 | ||||| Sbjct 1596 TTTGGGA 1602 >seq550293 Length=8024 Score = 105 bits (116), Expect = 7e-18 Identities = 175/249 (70%), Gaps = 3/249 (1%) Strand=Plus/Minus Query 165465 GCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAACTGGCAC-GACTTATCGGTAT 165523 || ||||||| |||||||||||| | | | |||||||| || | | || || | | Sbjct 7585 GCTTTTGCACCAATAGGTTTCATGTTACATTAATTTGAACTTGCTCGGTCTGTTCAAT-T 7527 Query 165524 TCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGTATTCGTTAGTGTTTTTCT 165583 || |||| ||||| || | |||||| |||| |||||| | || ||| | | || | Sbjct 7526 ACGATCTTATAATGCAATCTCGTTCTCTAGTCCAATTGCTAT-TTTGTTTATCTATTCTT 7468 Query 165584 TATGTATCCTCTGGGACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGGGTCGCAGCAAT 165643 ||| ||||| || || ||||| |||||||| ||| || ||| | | ||| | || Sbjct 7467 TATTTATCCACTCGGGCAATCTGGTTGGTTCTTTGCATCGAGTTTCAGCATAGCAACGAT 7408 Query 165644 CTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGACGCTGAATCCCTTTCACAT 165703 || ||||| | | ||| ||||| | || ||||| |||| | |||| || ||||| || Sbjct 7407 ATTTAGATTCATCATTTTCTTCCAATGTTTACATAATTGGAGGTTGAACCCATTTCATAT 7348 Query 165704 GATGGGCGT 165712 |||||| || Sbjct 7347 GATGGGAGT 7339 >seq337787 Length=336 Score = 98.7 bits (108), Expect = 1e-15 Identities = 175/250 (70%), Gaps = 5/250 (2%) Strand=Plus/Plus Query 163919 TGGGAACAATTCTGTAACTGGGTAACTTCAACCGACAATCGTTTGTATGTCGGTTGGTTC 163978 ||||| || ||||| |||||| ||||| || || |||||| | || |||| || ||| Sbjct 88 TGGGATCACTTCTGCAACTGGATAACTAGCACTGAAAATCGTCTTTACATCGGATGATTC 147 Query 163979 GGCGTCCTGATGATTCCCTGCCTGCTGG-CAGCGACTACATGT-TTCATCATCGCCTTCA 164036 || || |||||| |||| ||| | | | || || |||| || || ||| |||||| Sbjct 148 GGTGTTTTGATGAC-CCCTACCTTATTGACTGCAACCT-ATGTATTTATTATCTCCTTCA 205 Query 164037 TCGGTGCTCCTCCTGTGGACATCGATGGCATCCGCGAACCCGTCGCTGGTTCGCTCATGT 164096 || ||| ||||| | || || ||||| || || || | || || |||| | | | Sbjct 206 TCACTGCCCCTCCACTAGATATTGATGGTATTCGTGAGCATGTT-CTTGTTCTTTACTTT 264 Query 164097 ATGGAAACAACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACT 164156 |||||||||| || |||||||| ||||||| ||||| | | ||| |||||| Sbjct 265 ATGGAAACAATATTNNNNCTGGTGCTATTATCCCCACTTCTGCGGTGAACGGATTGCACT 324 Query 164157 TCTACCCCAT 164166 | ||||| || Sbjct 325 TTTACCCAAT 334 >seq40677 Length=4500 Score = 98.7 bits (108), Expect = 1e-15 Identities = 114/154 (74%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 164255 TACATGGGTCGTGAGTGGGAACTTTCTTACCGTCTTGGTATGCGTCCTTGGATTTGCGTA 164314 || ||||||||||||||||||||| || || ||| |||||||||||||||||| || Sbjct 154 TATATGGGTCGTGAGTGGGAACTTAGTTTCCATCTGGGTATGCGTCCTTGGATTGCTGTT 95 Query 164315 GCATACTCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCAA 164374 ||||| || ||| ||| || || || | || ||| ||| || | || ||| | || ||| Sbjct 94 GCATATTCAACTCATGTTGCAGCTGCTACTGTAGTTTTCTTGATTTACCCTATTGGCCAA 35 Query 164375 GGTTCTTTCTCTGATGCAATGCCTCTGGGCATCT 164408 || | ||||||| || ||| | || |||| Sbjct 34 GGAAGCTCTTCTGATGGTATACCTTTAGGAATCT 1 >seq428484 Length=423 Score = 95.1 bits (104), Expect = 1e-14 Identities = 81/99 (82%), Gaps = 2/99 (2%) Strand=Plus/Plus Query 165822 ACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGTTTCTGGTCTCAGATTTTT 165881 ||||| || || ||||||||||| ||||||||||||||||| || ||||| || || ||| Sbjct 244 ACTCAAGATGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTT 303 Query 165882 GGTATTGCTTTCAGCAATAAGCGTTGGCTTCACTTCTTT 165920 ||| ||||||| |||||| |||||| | || ||||| Sbjct 304 GGTGTTGCTTTTTCCAATAAACGTTGG--TTACATCTTT 340 >seq398894 Length=318 Score = 91.5 bits (100), Expect = 2e-13 Identities = 131/181 (72%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 163928 TTCTGTAACTGGGTAACTTCAACCGACAATCGTTTGTATGTCGGTTGGTTCGGCGTCCTG 163987 ||||| |||||| ||||| || || |||| | | || |||| |||||||| || || Sbjct 140 TTCTGCAACTGGATAACTAGCACTGAAAATCATCTTTACATCGGATGGTTCGGTGTTTTG 199 Query 163988 ATGATTCCCTGCCTGCTGGCAG--CGACTACATGTTTCATCATCGCCTTCATCGGTGCTC 164045 ||||| |||| ||| | | || | ||| | || || ||||||||||||| ||| | Sbjct 200 ATGAT-CCCTACCTTATTG-AGTACAACTTCCGTATTTATTATCGCCTTCATCGCTGCCC 257 Query 164046 CTCCTGTGGACATCGATGGCATCCGCGAACCCGTCGCTGGTTCGCTCATGTATGGAAACA 164105 |||| || || || ||||| || || || || || ||||||| | | |||||||||| Sbjct 258 CTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACA 317 Query 164106 A 164106 | Sbjct 318 A 318 >seq680530 Length=586 Score = 89.7 bits (98), Expect = 6e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 164141 GCTATCGGTCTGCACTTCTACCCCATCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTAC 164200 || ||||| ||||||| ||||| || |||||||| ||| | || || ||| | ||| Sbjct 50 GCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATTTGCTGATGAGTGGTTATAC 109 Query 164201 AACGGTGGTCCTTTCCAACTCGTTGTGTTCCACTTCCTGATTGGCATCTATGCTTACATG 164260 || |||||||||| | || |||| | ||||| | |||| | | ||| ||| Sbjct 110 AATGGTGGTCCTTATGAGCTAATTGTTCTAAACTTCTTACTTGGTGTAGCTTGTTATATG 169 Query 164261 GGTCGTGAGTGGGAACTTTCTTACCGTCTTGGTATGC 164297 |||||||||||||||||| || |||||| || |||| Sbjct 170 GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGCATGC 206 >seq207681 Length=5110 Score = 86.0 bits (94), Expect = 7e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 165165 GACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTT 165224 || |||||| | ||| ||||||||||||||||| || |||||||| || | | ||| Sbjct 4653 GATGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCTGGCCTATTGCCCTTT 4594 Query 165225 CCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTACTTTCGT 165274 || ||||||| | ||| | ||||||||| |||| ||||| ||||| || Sbjct 4593 CCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACAACTTTTGT 4544 >seq542539 Length=11310 Score = 84.2 bits (92), Expect = 2e-11 Identities = 111/153 (73%), Gaps = 1/153 (1%) Strand=Plus/Minus Query 164767 CCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACAC 164826 |||||| ||| ||| ||||| || || | | ||| || | ||||| | | | || Sbjct 7102 CCTCAAGCGTT-CAATTTCAATCAATCTGTAGTTGATAGTTAAGGTCGCATTATTGATAC 7044 Query 164827 CTGGGCAGACGTTCTCAACCGTGCTGGTCTGGGCATGGAAGTGATGCACGAGCGTAATGC 164886 ||||| || | ||||||||||| || || ||||||| ||||| | |||||||| Sbjct 7043 TTGGGCTGATATCATCAACCGTGCTAACCTTGGTGTGGAAGTTATGCATAAACGTAATGC 6984 Query 164887 TCACAACTTCCCTCTCGACCTTGCTGCTGCTGA 164919 ||||||||||||||| ||| | |||| || ||| Sbjct 6983 TCACAACTTCCCTCTAGACTTAGCTGATGTTGA 6951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546628826649240