Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq68655 168 8e-37 seq507140 131 2e-25 seq539347 123 3e-23 seq216476 113 5e-20 seq550293 89.7 6e-13 seq542539 89.7 6e-13 seq398894 87.8 2e-12 seq214663 84.2 3e-11 seq532379 82.4 9e-11 >seq68655 Length=5599 Score = 168 bits (186), Expect = 8e-37 Identities = 191/256 (75%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 177931 GGTCGTGAGTGGGAACTTTCTTACCGCCTAGGTATGCGTCCCTGGATCTGTGTAGCATAC 177990 |||||||||||||||||| || || | | ||||||||||| ||||| ||| ||||| Sbjct 722 GGTCGTGAGTGGGAACTTAATTTCCACATGGGTATGCGTCCTTGGATTGATGTTGCATAT 781 Query 177991 TCTGCTCCAGTCGCCGCAGCATCTGCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCT 178050 || |||| || || || | ||||| | ||| | |||| ||| | ||| ||| Sbjct 782 TCAGCTCATGTTGCAGCTACTACTGCTATTTTCTTGATTTACCCTATTGGTTAAGTAAGC 841 Query 178051 TTCTCTGACGCTATGCCCCTGGGTATCAGTGGCACCTTCAACTACATGCTTGTCTTCCAA 178110 || | ||| | |||||| | || ||| ||| || |||||| ||| |||| ||||| Sbjct 842 TTTTTTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACATTATGATTGTATTCCAG 901 Query 178111 GCAGAGCACAACATCCTGATGCACCCCTTCCACATGTTGGGCGTCGCTGGTGTCTTTGGT 178170 ||||||||||||||||| ||||| || ||||||||||| || | |||||||| || || Sbjct 902 GCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTATAGCTGGTGTATTCGGC 961 Query 178171 GGTTCTCTGTTCAGTG 178186 ||||| || ||||||| Sbjct 962 GGTTCCCTATTCAGTG 977 >seq507140 Length=321 Score = 131 bits (144), Expect = 2e-25 Identities = 179/250 (72%), Gaps = 0/250 (0%) Strand=Plus/Plus Query 179243 AATTGCTGTCTTTGTGTCTGTTTTTCTCATGTATCCTCTCGGACAGTCCTCGTGGTTCTT 179302 ||||| ||| ||||| ||||| || || || ||||| || | || || |||||||| Sbjct 48 AATTGTTGTTTTTGTTTCTGTATTCCTTATTTATCCACTGGTGCAATCTGGTTGGTTCTT 107 Query 179303 TGCGCCGTCGTTTGGAGTTGCAGCGATTTTCCGCTTCCTACTCTTCCTACAGGGCTTCCA 179362 ||||||| ||||| || ||| |||| || || ||| | || ||| | || || || || Sbjct 108 TGCGCCGAGTTTTGGCGTAGCAACGATATTTCGATTCATCCTTTTCTTCCAAGGATTTCA 167 Query 179363 CAACTGGACGCTCAACCCGTTCCACATGATGGGTGTAGCAGGTATCCTGGGCGGAGCATT 179422 || |||||| | ||||| || || |||||||| || || | | | || | || | Sbjct 168 TAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCCGAGTATTAGGTGCGGCTCT 227 Query 179423 GCTTTGTGCCATTCATGGTGCTACAGTAGAGAACACACTCTTTGAAGACAGTGACCAATC 179482 ||| || || |||||||| || || ||||| ||||| || ||||| ||| |||| | Sbjct 228 GCTATGCGCTATTCATGGAGCGACCGTAGAAAACACTCTATTTGAGGACGGTGATGGTGC 287 Query 179483 AAATACATTC 179492 |||||| ||| Sbjct 288 AAATACCTTC 297 >seq539347 Length=3493 Score = 123 bits (136), Expect = 3e-23 Identities = 123/158 (78%), Gaps = 1/158 (1%) Strand=Plus/Plus Query 178054 TCTGACGCTATGCCCCTGGGTATCAGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCA 178113 ||||| | |||||| | || ||| ||| || ||||||| ||| |||| ||||| ||| Sbjct 1 TCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCA 60 Query 178114 GAGCACAACATCCTGATGCACCCCTTCCACATGTTGGGCGTCGCTGGTGTCTTTGGTGGT 178173 |||||||||||||| ||||| || ||||||||||| || || ||| |||| || || ||| Sbjct 61 GAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAGCT-GTGTATTCGGCGGT 119 Query 178174 TCTCTGTTCAGTGCGATGCACGGTTCTCTGGTTACTTC 178211 | || |||| ||| ||||| ||||| |||| || || Sbjct 120 TTCCTATTCACTGCTATGCATGGTTCCTTGGTAACCTC 157 >seq216476 Length=3150 Score = 113 bits (124), Expect = 5e-20 Identities = 172/240 (72%), Gaps = 4/240 (2%) Strand=Plus/Minus Query 179164 TAGGTTTCATGCTTCGGCAGTTTGAAATCGCACG-TCTAGTCGGTATTCGTCCTTACAAT 179222 ||||||||||| | || || |||||| | || |||| | || | || | ||| ||| Sbjct 3003 TAGGTTTCATGTTACGCCAATTTGAACATGATCGATCTATTTAGT-TGCGACTTTATAAT 2945 Query 179223 GCAATCGCGTTTTCTGGTCCAATTGCTG-TCTTTGTGTCTGTTTTTCTCATGTATCCTCT 179281 |||||| | || ||||||||||||| || | ||||| || || || || | ||||| || Sbjct 2944 GCAATCCCATTCTCTGGTCCAATTGTTGTTTTTTGTTTCCGTATTCCTTCTTTATCCACT 2885 Query 179282 CGGACAGTCCTCGTGGTTCTTTGCGCCGTCGTTTGGAGTTGCAGCGATTTTCCGCTTCCT 179341 || || || |||||||||| |||| ||||| || |||||||| || | ||| | Sbjct 2884 GGGGCAATCTGGTTGGTTCTTTGTGCCGAGTTTTGGTGTAGCAGCGATGTTTTGATTCAT 2825 Query 179342 ACTCTTCCTACAGGGCTTCCACAACTGGACGCTCAACCCGTTCCACATGATGGGTGTAGC 179401 || || || | || || || || |||| | | ||||| || || |||||||| || || Sbjct 2824 CCT-TTTCTTCTAGGATTTCATAATTGGATGTTGAACCCATTTCATATGATGGGAGTTGC 2766 >seq550293 Length=8024 Score = 89.7 bits (98), Expect = 6e-13 Identities = 172/250 (69%), Gaps = 3/250 (1%) Strand=Plus/Minus Query 179150 TGCCTTCGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATCGCACG-TCTAGTCGGTA 179208 ||| || || | |||||||||||| | | | |||||| | || || ||| || | Sbjct 7586 TGCTTTTGCACCAATAGGTTTCATGTTACATTAATTTGAACTTGCTCGGTCTGTTCAAT- 7528 Query 179209 TTCGTCCTTACAATGCAATCGCGTTTTCTGGTCCAATTGCTGTCTTTGTGTCTGTTTTTC 179268 | || |||| ||||||||| |||| ||| ||||||||||| | ||||| | | | || Sbjct 7527 TACGATCTTATAATGCAATCTCGTTCTCTAGTCCAATTGCTAT-TTTGTTTATCTATTCT 7469 Query 179269 TCATGTATCCTCTCGGACAGTCCTCGTGGTTCTTTGCGCCGTCGTTTGGAGTTGCAGCGA 179328 | || ||||| ||||| || || ||||||||||| || || | | ||| ||| Sbjct 7468 TTATTTATCCACTCGGGCAATCTGGTTGGTTCTTTGCATCGAGTTTCAGCATAGCAACGA 7409 Query 179329 TTTTCCGCTTCCTACTCTTCCTACAGGGCTTCCACAACTGGACGCTCAACCCGTTCCACA 179388 | || | ||| | | ||| | || | || || || |||| | | ||||| || || | Sbjct 7408 TATTTAGATTCATCATTTTCTTCCAATGTTTACATAATTGGAGGTTGAACCCATTTCATA 7349 Query 179389 TGATGGGTGT 179398 ||||||| || Sbjct 7348 TGATGGGAGT 7339 >seq542539 Length=11310 Score = 89.7 bits (98), Expect = 6e-13 Identities = 115/155 (74%), Gaps = 3/155 (2%) Strand=Plus/Minus Query 178437 CCTCAACGGTTTCAACTTCAACCAGTCCATCATGGATAGTCAGGG-CAAAGTCCTGAACA 178495 |||||| ||| ||| ||||| || || | | |||||| | || | | | ||| | Sbjct 7102 CCTCAAGCGTT-CAATTTCAATCAATCTGTAGTTGATAGTTAAGGTCGCATTATTGAT-A 7045 Query 178496 CCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCACGAGCGTAATG 178555 | ||||| || | ||||||||||| |||||| ||||||| ||||| | ||||||| Sbjct 7044 CTTGGGCTGATATCATCAACCGTGCTAACCTTGGTGTGGAAGTTATGCATAAACGTAATG 6985 Query 178556 CTCACAACTTCCCTCTTGACCTCGCTGCTGCTGAA 178590 |||||||||||||||| ||| | |||| || |||| Sbjct 6984 CTCACAACTTCCCTCTAGACTTAGCTGATGTTGAA 6950 >seq398894 Length=318 Score = 87.8 bits (96), Expect = 2e-12 Identities = 129/180 (72%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 177598 TTCTGTAACTGGGTAACCTCCACCAACAATCGTCTGTATGTCGGTTGGTTCGGTGTCCTG 177657 ||||| |||||| |||| ||| | |||| ||| || |||| ||||||||||| || Sbjct 140 TTCTGCAACTGGATAACTAGCACTGAAAATCATCTTTACATCGGATGGTTCGGTGTTTTG 199 Query 177658 ATGATCCCTACGCTGCTCGCTGCTGCTATCTGT-TTCATCGTCGCTTTCGTCGCTGCTCC 177716 ||||||||||| | | | | || || || || || |||| ||| ||||||| || Sbjct 200 ATGATCCCTACCTTATTGAGTACAACT-TCCGTATTTATTATCGCCTTCATCGCTGCCCC 258 Query 177717 TCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCCCTGATGTATGGCAACAA 177776 ||| || || || || || || ||||| || || ||||||| | | ||||| ||||| Sbjct 259 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 318 >seq214663 Length=1678 Score = 84.2 bits (92), Expect = 3e-11 Identities = 184/273 (67%), Gaps = 7/273 (3%) Strand=Plus/Plus Query 177598 TTCTGTAACTGGGTAACCTCCACCAACAATCGTCTGTATGTCGGTTGGTTCGGTGTCCTG 177657 |||| |||||| |||| || |||||||||| || |||| ||||| |||| || Sbjct 1358 TTCTACAACTGGATAACTAGCAGTGACAATCGTCTATACATCGGATGGTTTCGTGTTTTG 1417 Query 177658 ATGATCCCTACGCTGCTCGCTGCTGCTATCTGT-TTCATCGTCGCTTTCGTCGCTGCTCC 177716 ||||||||||| | | | | || ||||| || || |||| ||| |||| || | Sbjct 1418 ATGATCCCTACCTTATTGACGACAACT-TCTGTATTTATTATCGCCTTCATCGCCGCCCT 1476 Query 177717 TCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCCCTGATGTATGGCAACAA 177776 || || || || || || || ||||| | || ||||||| | | || | ||||| Sbjct 1477 TCTAGTAGATATTGATGGTATTCGTGAGCTTGTTTCTGGTTCTTTACTTTACAGAAACAA 1536 Query 177777 CATCATTTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATTGGTCTCCACTTCTATCCCAT 177836 || | ||||||| | || | ||| ||||| || || | | ||||| || || || Sbjct 1537 TATTACCTCTGGTGTTATTATCCCTACTTCTGCGGCGATCAGATTGCACTTGTACCCAAT 1596 Query 177837 -----CTGGGAAGCAGCTTCTCTCGATGAGTGG 177864 |||||||| || ||| | ||||||||| Sbjct 1597 TTGGGATGGGAAGCTGCATCTGTTGATGAGTGG 1629 >seq532379 Length=15352 Score = 82.4 bits (90), Expect = 9e-11 Identities = 161/234 (69%), Gaps = 7/234 (3%) Strand=Plus/Plus Query 178866 CGTGATCGGTTCGTTTTTGTTGGTTGGTCAGGTCTTCTTCTGTTCCCTACTGCTTACATG 178925 || || || ||||||||||| || ||||| || || | || || ||| |||||| | Sbjct 14385 CGGGACCGTTTCGTTTTTGTAGGATGGTCTGGCCTATTGCTCTTTCCTTGTGCTTATTTC 14444 Query 178926 GCACTGGGCGGTTGGCTCACGGGCACAACATTCGTCACCTCGTGGTATACTCACGGGATT 178985 || | || ||||| | || || ||||| || || || | |||||||| || |||| Sbjct 14445 GCTTTAGGGTGTTGGTTTACCGGGACAACTTTTGTAACTTTTTGGTATACCCA--TGATT 14502 Query 178986 -GCTTCTTCGTATCTTGAGGGATGTAATTTCCTTACTGCTGCTGTATCAACTCCTGCTGA 179044 ||| ||| ||| | || || |||||||| | || || | || || || ||||| | Sbjct 14503 GGCTAGTTCCTATTTGGAAGGCTGTAATTTTTTAACCGCAGTAGTTTCTACCCCTGCCAA 14562 Query 179045 CGCTCTCGGACATTCCCTACTTCTTCTATGGGGTCCAGAAGCTCAGGGAGATTT 179098 | | | ||||| | | || |||||||| || ||||| || |||||||| Sbjct 14563 TAGTTTAGCACATT---TGTTGCTACTATGGGG-CCCGAAGCACAAGGAGATTT 14612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584517409095120