Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq68655 132 6e-26 seq507140 120 4e-22 seq216476 111 2e-19 seq37697 96.9 4e-15 seq398894 95.1 1e-14 seq428484 93.3 5e-14 seq539347 91.5 2e-13 seq550293 89.7 6e-13 seq542539 87.8 2e-12 seq551564 84.2 3e-11 seq214663 82.4 9e-11 >seq68655 Length=5599 Score = 132 bits (146), Expect = 6e-26 Identities = 184/255 (72%), Gaps = 2/255 (1%) Strand=Plus/Plus Query 169685 GGTCGTGAGTGGGAATTGTCCTATCGTC-TGGGTATGCGCCCTTGGATCTGTGTTGCTTA 169743 ||||||||||||||| | | | || | |||||||||| |||||||| |||||| || Sbjct 722 GGTCGTGAGTGGGAACT-TAATTTCCACATGGGTATGCGTCCTTGGATTGATGTTGCATA 780 Query 169744 CTCTGCTCCCGTTGCGGCAGCCTCCGCTGTTTTCCTGGTCTACCCGTTTGGGCAAGGGTC 169803 || |||| ||||| || | | ||| ||||| || | ||||| |||| ||| Sbjct 781 TTCAGCTCATGTTGCAGCTACTACTGCTATTTTCTTGATTTACCCTATTGGTTAAGTAAG 840 Query 169804 GTTCTCTGACGCTATGCCTCTGGGTATCTCGGGAACCTTTAACTACATGCTGGTCTTCCA 169863 || | ||| | ||||||| | || ||||| || || || ||| ||| | || ||||| Sbjct 841 CTTTTTTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACATTATGATTGTATTCCA 900 Query 169864 AGCTGAGCACAACATCCTCATGCACCCCTTCCACATGCTTGGTGTTGCGGGAGTGTTTGG 169923 || |||||||||||||| ||||| || ||||||||| | ||| | || || || || || Sbjct 901 GGCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTATAGCTGGTGTATTCGG 960 Query 169924 TGGGTCTCTGTTTAG 169938 || || || || || Sbjct 961 CGGTTCCCTATTCAG 975 >seq507140 Length=321 Score = 120 bits (132), Expect = 4e-22 Identities = 185/264 (70%), Gaps = 0/264 (0%) Strand=Plus/Plus Query 171005 TGTGTTTGTCAGCGTGTTCCTCATCTATCCTCTTGGGCAGTCAAGTTGGTTCTTCGCACC 171064 ||| ||||| || ||||| || ||||| || | ||| || |||||||||| || || Sbjct 54 TGTTTTTGTTTCTGTATTCCTTATTTATCCACTGGTGCAATCTGGTTGGTTCTTTGCGCC 113 Query 171065 TTCCTTTGGAGTTGCAGCAATCTTCCGCTTCCTGCTCTTCCTGCAAGGTTTCCACAACTG 171124 ||||| || ||| | || || || ||| | || ||| | ||||| || || || || Sbjct 114 GAGTTTTGGCGTAGCAACGATATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTG 173 Query 171125 GACACTGAATCCATTTCATATGATGGGTGTTGCAGGTATCCTCGGCGGTGCATTGCTTTC 171184 ||| |||| ||||||||||||||||| ||||| | | | || | || |||| | Sbjct 174 GACGTTGAACCCATTTCATATGATGGGAGTTGCCCGAGTATTAGGTGCGGCTCTGCTATG 233 Query 171185 TGCAATTCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGATCAAGCAAACAC 171244 || |||||||| | || ||||| || ||| | | ||| || |||||| ||||| || Sbjct 234 CGCTATTCATGGAGCGACCGTAGAAAACACTCTATTTGAGGACGGTGATGGTGCAAATAC 293 Query 171245 CTTTAAGGCATTTGACACGACTCA 171268 ||| || ||| || | ||||| Sbjct 294 CTTCTGTGCTTTTAACCCAACTCA 317 >seq216476 Length=3150 Score = 111 bits (122), Expect = 2e-19 Identities = 174/241 (72%), Gaps = 6/241 (2%) Strand=Plus/Minus Query 170920 TAGGTTTCATGCTTCGGCAGTTTGAA-ATCAGTCG-TCTCGTAGGGATTAGACCGTACAA 170977 ||||||||||| | || || |||||| || | ||| ||| | | | ||| || || Sbjct 3003 TAGGTTTCATGTTACGCCAATTTGAACATGA-TCGATCTATTTAGT-TGCGACTTTATAA 2946 Query 170978 TGCAATCGCTTTCTCTGGTCCTATCGCTGTGTTT-GTCAGCGTGTTCCTCATCTATCCTC 171036 ||||||| | ||||||||||| || | ||| ||| || ||| ||||| | ||||| | Sbjct 2945 TGCAATCCCATTCTCTGGTCCAATTGTTGTTTTTTGTTTCCGTATTCCTTCTTTATCCAC 2886 Query 171037 TTGGGCAGTCAAGTTGGTTCTTCGCACCTTCCTTTGGAGTTGCAGCAATCTTCCGCTTCC 171096 | ||||| || |||||||||| | || ||||| || ||||| || || | ||| Sbjct 2885 TGGGGCAATCTGGTTGGTTCTTTGTGCCGAGTTTTGGTGTAGCAGCGATGTTTTGATTCA 2826 Query 171097 TGCTCTTCCTGCAAGGTTTCCACAACTGGACACTGAATCCATTTCATATGATGGGTGTTG 171156 | || ||| | | ||| || || || |||| |||| ||||||||||||||||| |||| Sbjct 2825 TCCTTTTCTT-CTAGGATTTCATAATTGGATGTTGAACCCATTTCATATGATGGGAGTTG 2767 Query 171157 C 171157 | Sbjct 2766 C 2766 >seq37697 Length=321 Score = 96.9 bits (106), Expect = 4e-15 Identities = 133/185 (72%), Gaps = 1/185 (1%) Strand=Plus/Plus Query 170973 TACAATGCAATCGCTTTCTCTGGTCCTATCGCTGTGTTTGTCAGCGTGTTCCTCATCTAT 171032 || ||||||||| | ||||||||| | || | ||| ||||| ||| ||||| || ||| Sbjct 3 TATAATGCAATCCCATTCTCTGGTTCAATTGTTGTTTTTGTTTTCGTATTCCTTATTTAT 62 Query 171033 CCTCTTGGGCAGTCAAGTTGGTTCTTCGCACCTTCCTTTGGAGTTGCAGCAATCTTCCGC 171092 || || ||||| || | |||||||| | || ||||| | || || || || | Sbjct 63 CCACTGGGGCAATCTGGCTGGTTCTTTGTGCCGAGTTTTGGTATAGCTGCGATATTTTGT 122 Query 171093 TTCCTGCTCTTCCTGCAAGGTTTCCACAACTGGACACTGAATCCATTTCATATGATGGGT 171152 ||| | || ||| | | ||| || || || |||| |||| ||||||||||||| ||| Sbjct 123 TTCATCCTTTTCTT-CTAGGATTTCAAAATTGGATGTTGAACCCATTTCATATGACGGGA 181 Query 171153 GTTGC 171157 ||||| Sbjct 182 GTTGC 186 >seq398894 Length=318 Score = 95.1 bits (104), Expect = 1e-14 Identities = 134/182 (74%), Gaps = 6/182 (3%) Strand=Plus/Plus Query 169352 TTCTGTAACTGGGTAACCTCCACTGACAACCGTCTGTATGTCGGTTGGTTCGGCGTCCTG 169411 ||||| |||||| |||| |||||| || | ||| || |||| |||||||| || || Sbjct 140 TTCTGCAACTGGATAACTAGCACTGAAAATCATCTTTACATCGGATGGTTCGGTGTTTTG 199 Query 169412 ATGATCCCCTGCCTGCTGGCAGCAACCACTT--GT-TTCATCATCGCCTTCATCGGTGCT 169468 |||||||| | ||| | | || | | |||| || || || ||||||||||||| ||| Sbjct 200 ATGATCCC-TACCTTATTG-AGTA-CAACTTCCGTATTTATTATCGCCTTCATCGCTGCC 256 Query 169469 CCCCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGTTCTCTGATGTATGGTAAC 169528 || || || || || || || || || || || ||| |||||||| | | ||||| ||| Sbjct 257 CCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAAC 316 Query 169529 AA 169530 || Sbjct 317 AA 318 >seq428484 Length=423 Score = 93.3 bits (102), Expect = 5e-14 Identities = 103/136 (76%), Gaps = 1/136 (1%) Strand=Plus/Plus Query 171229 GTGATCAAGCAAACACCTTTAAGGCATTTGACACGACTCAGGAGGAAGAGACATATTCTA 171288 ||||| ||||| ||||| || ||| || | ||||| || ||||| || ||||| | Sbjct 209 GTGATGGTGCAAATACCTTCCGTGCTTTTAACCCAACTCAAGATGAAGAAACTTATTCAA 268 Query 171289 TGGTCACTGCTAATCGTTTCTGGTCGCAGATTTTTGGTATCGCGTTCAGCAATAAGCGTT 171348 ||||||||||||| || || ||||| || || |||||| | || || |||||| |||| Sbjct 269 TGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTT 328 Query 171349 GGTTGCATTTCTTTAT 171364 |||| ||| | ||||| Sbjct 329 GGTTACATCT-TTTAT 343 >seq539347 Length=3493 Score = 91.5 bits (100), Expect = 2e-13 Identities = 118/162 (73%), Gaps = 1/162 (1%) Strand=Plus/Plus Query 169808 TCTGACGCTATGCCTCTGGGTATCTCGGGAACCTTTAACTACATGCTGGTCTTCCAAGCT 169867 ||||| | ||||||| | || ||||| || || || |||| ||| | || ||||| || Sbjct 1 TCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCA 60 Query 169868 GAGCACAACATCCTCATGCACCCCTTCCACATGCTTGGTGTTGCGGGAGTGTTTGGTGGG 169927 |||||||||||||| ||||| || ||||||||| | ||||| || | || || || || Sbjct 61 GAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAGC-TGTGTATTCGGCGGT 119 Query 169928 TCTCTGTTTAGCGCGATGCACGGTAGCCTCGTCACTTCGAGT 169969 | || || | || ||||| ||| | | || || || ||| Sbjct 120 TTCCTATTCACTGCTATGCATGGTTCCTTGGTAACCTCTAGT 161 >seq550293 Length=8024 Score = 89.7 bits (98), Expect = 6e-13 Identities = 174/252 (69%), Gaps = 5/252 (2%) Strand=Plus/Minus Query 170907 GCCTTTGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATCAGTCG-TCTCGTAGGGAT 170965 || ||||| | |||||||||||| | | | |||||| | ||| ||| | || Sbjct 7585 GCTTTTGCACCAATAGGTTTCATGTTACATTAATTTGAACTTGCTCGGTCTGTTCA--AT 7528 Query 170966 TA-GACCGTACAATGCAATCGCTTTCTCTGGTCCTATCGCTGTGTTTGTCAGCGTGTTCC 171024 || || | || ||||||||| | |||||| |||| || ||| | || | | | | ||| Sbjct 7527 TACGATCTTATAATGCAATCTCGTTCTCTAGTCCAATTGCTATTTTGTTTATC-TATTCT 7469 Query 171025 TCATCTATCCTCTTGGGCAGTCAAGTTGGTTCTTCGCACCTTCCTTTGGAGTTGCAGCAA 171084 | || ||||| || ||||| || |||||||||| ||| | || | | ||| | | Sbjct 7468 TTATTTATCCACTCGGGCAATCTGGTTGGTTCTTTGCATCGAGTTTCAGCATAGCAACGA 7409 Query 171085 TCTTCCGCTTCCTGCTCTTCCTGCAAGGTTTCCACAACTGGACACTGAATCCATTTCATA 171144 | || | ||| | | ||| | ||| |||| || || |||| |||| |||||||||| Sbjct 7408 TATTTAGATTCATCATTTTCTTCCAATGTTTACATAATTGGAGGTTGAACCCATTTCATA 7349 Query 171145 TGATGGGTGTTG 171156 ||||||| |||| Sbjct 7348 TGATGGGAGTTG 7337 >seq542539 Length=11310 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 170201 TTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACCTGGGCAGAC 170260 ||||| ||||| || || | | ||| || | ||||| | | | || ||||| || Sbjct 7093 TTCAATTTCAATCAATCTGTAGTTGATAGTTAAGGTCGCATTATTGATACTTGGGCTGAT 7034 Query 170261 GTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATGCTCACAACTTC 170320 | ||||||||||| ||||| ||||||| ||||| | |||||||||||||||||| Sbjct 7033 ATCATCAACCGTGCTAACCTTGGTGTGGAAGTTATGCATAAACGTAATGCTCACAACTTC 6974 Query 170321 CCTCTCGACCTCGCTGCTGCTGA 170343 ||||| ||| | |||| || ||| Sbjct 6973 CCTCTAGACTTAGCTGATGTTGA 6951 >seq551564 Length=5390 Score = 84.2 bits (92), Expect = 3e-11 Identities = 124/176 (70%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 167448 TACATCCTTGACGCGGCTGAGGAAGCGGGTGTGGACATCAACTACTCGTGCCGTGCAGGC 167507 |||||||| |||||||| ||||| || || ||||| | |||||||||||| || ||| Sbjct 624 TACATCCTGGACGCGGCGGAGGAGGCCGGCGTGGAGCTGCCCTACTCGTGCCGGGCCGGC 565 Query 167508 GCTTGTTCGTCGTGCGCGGGAAAACTCATCTCTGGCACCGTAGATCAAAGCGATCAATCC 167567 | || ||| ||||||| || || || || ||| || || || || || Sbjct 564 TCGTGCTCGACGTGCGCCGGGAAGCTGGCGTCCGGCGAGGTGGACCAGTCGGACGGGTCG 505 Query 167568 TTCCTGGACGATGATCAAATTGCCGAAGGTTTCCTTCTCACCTGTGTGTCCTATCC 167623 ||||||||||| | || || ||||| || | | | |||||||| || |||| || Sbjct 504 TTCCTGGACGACGCGCAGATGGCCGAGGGGTACGTGCTCACCTGCGTCGCCTACCC 449 >seq214663 Length=1678 Score = 82.4 bits (90), Expect = 9e-11 Identities = 182/273 (67%), Gaps = 5/273 (2%) Strand=Plus/Plus Query 169352 TTCTGTAACTGGGTAACCTCCACTGACAACCGTCTGTATGTCGGTTGGTTCGGCGTCCTG 169411 |||| |||||| |||| || |||||| ||||| || |||| ||||| | || || Sbjct 1358 TTCTACAACTGGATAACTAGCAGTGACAATCGTCTATACATCGGATGGTTTCGTGTTTTG 1417 Query 169412 ATGATCCCCTGCCTGCTGGCAGCAACCACTTGTTTCATCATCGCCTTCATCGGTGCTCCC 169471 |||||||| | | || | |||| || || || ||||||||||||| || | Sbjct 1418 ATGATCCCTACCTTATTGACGACAACTTCTGTATTTATTATCGCCTTCATCGCCGCCCTT 1477 Query 169472 CCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGTTCTCTGATGTATGGTAACAAC 169531 | || || || || || || || || | ||| |||||||| | | || | ||||| Sbjct 1478 CTAGTAGATATTGATGGTATTCGTGAGCTTGTTTCTGGTTCTTTACTTTACAGAAACAAT 1537 Query 169532 ATCATCTCTGGTGCTGTTGTGCCCTCTTCCAACGCAATCGGTCTTCACTTCTATCCCAT- 169590 || | |||||||| | || | || |||| || ||| | | ||||| || || || Sbjct 1538 ATTACCTCTGGTGTTATTATCCCTACTTCTGCGGCGATCAGATTGCACTTGTACCCAATT 1597 Query 169591 ----CTGGGAAGCAGCAAGTCTCGATGAATGGT 169619 |||||||| ||| | | ||||| |||| Sbjct 1598 TGGGATGGGAAGCTGCATCTGTTGATGAGTGGT 1630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 580489845566640