Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq7 140 7e-28 seq4 136 8e-27 seq2 109 1e-18 seq5 107 4e-18 seq9 105 1e-17 seq3 105 1e-17 seq8 98.7 2e-15 seq6 98.7 2e-15 >seq7 Length=35964315 Score = 140 bits (154), Expect = 7e-28 Identities = 306/453 (68%), Gaps = 4/453 (1%) Strand=Plus/Minus Query 230173 TTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 230232 || |||||||| |||||||||| | || ||||| || || | || || || ||| Sbjct 23911906 TTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTTGAGGGCATCTTCTTCTCGGGCTCCTTC 23911847 Query 230233 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 230292 ||||||||||| ||||| ||| || | ||||| |||||| | || |||||| Sbjct 23911846 TGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGCCTCACCTTCTCCAACGAG 23911787 Query 230293 TTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTATGTATTCAAAGCTC 230352 ||||| ||||||||||| ||||| | |||| | || | || ||| Sbjct 23911786 CTCATCTCCCGCGACGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACGACCTCCTC 23911727 Query 230353 CAGAACAAGCTACCATTCGAGACG-GTCAAACAAATCATTACAGAAGCAGTTGAAAACGA 230411 | | |||||| | | | | || ||| | ||| | | || || || || | ||| Sbjct 23911726 CGCAGCAAGCT-CGACGAGGGCCGCGTCCGCGAGATCGTCGCCGACGCCGTCGACATCGA 23911668 Query 230412 AAAGGAGTTCATTTGTGACGCTATTCCATGTCGC-CTTATTGGCATGAACGCTGAACTTA 230470 |||||| | || ||||| | || ||||| || | || ||||||| | || | Sbjct 23911667 GCGCGAGTTCGTCTGCGACGCGCTCCCC-GTCGCGCTCGTCGGAATGAACGGCGGGCTCA 23911609 Query 230471 TGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAG 230530 || | ||||||||||| ||||| ||||||||| | | | || || || || |||| Sbjct 23911608 TGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCATGGCGCTGGGGCACCAGAAGA 23911549 Query 230531 TGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCA 230590 |||||||| ||||| || | | ||||||||||| ||||| || || ||||||| Sbjct 23911548 TGTACAACGTCGCCAACCCATTCGACTGGATGGAGCTCATCTCGCTGCAGGGCAAGACCA 23911489 Query 230591 ACTTCTTCGAAAAGCGTGTCAGTGACTATCAGA 230623 |||||||||| ||||| ||| | || || |||| Sbjct 23911488 ACTTCTTCGAGAAGCGCGTCGGGGAGTACCAGA 23911456 >seq4 Length=40407879 Score = 136 bits (150), Expect = 8e-27 Identities = 313/462 (68%), Gaps = 11/462 (2%) Strand=Plus/Minus Query 230173 TTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 230232 || |||||||| |||||||| | | || || || || || | || || || ||| Sbjct 10866248 TTCGCCGAGCGACTCGTCGCGTTCGCCTGCGTCGAGGGAATCTTCTTCTCGGGCTCCTTC 10866189 Query 230233 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 230292 ||||||||||| ||||| ||| || | ||||| |||||| | || |||||| Sbjct 10866188 TGCGCCATCTTCTGGCTCAAGAAGCGGGGGCTCATGCCGGGCCTCACCTTCTCCAACGAG 10866129 Query 230293 TTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTA-TGTATTCAAAGCT 230351 ||||| ||||||||||| || || | |||| || || | | || || Sbjct 10866128 CTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCG-CGTGCCTCCTCTACGACCTCCT 10866070 Query 230352 CCAGAACAAGCTACCATTCGAGACG---GTCAAACAAATCATTACAGAAGCAGTTGAAAA 230408 || | |||||| | | |||| | ||| | ||| | | || || || || | Sbjct 10866069 CCGCAGCAAGCT-CGA--CGAGCCCCGCGTCCGCGAGATCGTCGCCGACGCCGTCGACAT 10866013 Query 230409 CGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC-CTTATTGGCATGAACGCTGAAC 230467 ||| ||||| | || ||||| | || ||||| || | |||||||||| | | Sbjct 10866012 CGAGCGAGAGTTTGTCTGCGACGCGCTCCCC-GTCGCGCTCGTCGGCATGAACGGCGCGC 10865954 Query 230468 TTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGA 230527 | ||| | ||||||||||| ||||| || |||||| | | | || || || | | ||| Sbjct 10865953 TAATGAGCCAGTACATCGAGTTCGTCGCAGACCGCCTGCTCATGGCTCTCGGGTGCAAGA 10865894 Query 230528 AAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGA 230587 | |||||||| | |||||||||| | ||||||||||| ||||| || || |||| Sbjct 10865893 AGATGTACAACGCCGCCAACCCCTTTGACTGGATGGAGCTCATCTCGCTGCAGGGCAAGA 10865834 Query 230588 CCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAG-AGGCCT 230628 | ||||||||||| ||||| ||| | ||||| ||| |||||| Sbjct 10865833 CAAACTTCTTCGAGAAGCGCGTCGGCGACTACCAGAAGGCCT 10865792 >seq2 Length=49199997 Score = 109 bits (120), Expect = 1e-18 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 165707 CTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCG 165766 |||||||||||||||||||||||||||||| || || |||| || ||||||||||||||| Sbjct 28500323 CTTGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 28500382 Query 165767 AGCCCCACGATGGGC 165781 ||||||||| ||||| Sbjct 28500383 AGCCCCACGGTGGGC 28500397 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 27801869 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 27801810 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 27801809 CCCACGGTGGGC 27801798 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 28938623 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 28938682 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 28938683 CCCACGGTGGGC 28938694 >seq5 Length=47252588 Score = 107 bits (118), Expect = 4e-18 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 ||||||||||||||||||||||||||||| || || |||| || |||||||||||||||| Sbjct 46540081 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 46540022 Query 165768 GCCCCACGATGGGC 165781 |||||||| ||||| Sbjct 46540021 GCCCCACGGTGGGC 46540008 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 35642319 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 35642378 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 35642379 CCCACGGTGGGC 35642390 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 35642647 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 35642706 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 35642707 CCCACGGTGGGC 35642718 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 36610808 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 36610867 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 36610868 CCCACGGTGGGC 36610879 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||| | Sbjct 41101813 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAAC 41101872 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 41101873 CCCACGGTGGGC 41101884 >seq9 Length=58970307 Score = 105 bits (116), Expect = 1e-17 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||||||||||||||||||||||||| || || |||| || ||||||||||||||||| Sbjct 18060682 TGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 18060741 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 18060742 CCCCACGGTGGGC 18060754 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 42816167 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 42816108 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 42816107 CCCACGGTGGGC 42816096 >seq3 Length=50651951 Score = 105 bits (116), Expect = 1e-17 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||||||||||||||||||||||||| || || |||| || ||||||||||||||||| Sbjct 12368837 TGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 12368896 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 12368897 CCCCACGGTGGGC 12368909 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 12961728 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 12961787 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 12961788 CCCACGGTGGGC 12961799 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 17596472 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 17596531 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 17596532 CCCACGGTGGGC 17596543 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 41127218 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 41127159 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 41127158 CCCACGGTGGGC 41127147 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 46659089 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 46659030 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 46659029 CCCACGGTGGGC 46659018 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 25805977 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 25806036 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 25806037 CCCACGGTGGGC 25806048 >seq8 Length=40689132 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 40358578 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 40358637 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 40358638 CCCACGGTGGGC 40358649 >seq6 Length=36014550 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 25834321 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 25834380 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 25834381 CCCACGGTGGGC 25834392 Score = 86.0 bits (94), Expect = 1e-11 Identities = 64/74 (86%), Gaps = 2/74 (3%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGT--TCGA 165767 ||| ||||||||||||||||||||||| || | |||| || |||||||||||| |||| Sbjct 25357034 GCCTGTCTAGCTCAGTCGGTAGAGCGCAAGGCAATTAACCTTGTGGTCGTGGGTTCTCGA 25356975 Query 165768 GCCCCACGATGGGC 165781 |||||||| ||||| Sbjct 25356974 GCCCCACGGTGGGC 25356961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057819432514310