Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq4 84.2 2e-11 seq7 82.4 8e-11 >seq4 Length=40407879 Score = 84.2 bits (92), Expect = 2e-11 Identities = 118/163 (72%), Gaps = 2/163 (1%) Strand=Plus/Plus Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258 || |||||||||||||| || || || ||||| | | ||| || |||||||| || || Sbjct 10866085 AGGCACGCGAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTG 10866144 Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCCGAAAA 16317 | || ||||| || || ||||| | |||||| || || ||| || || ||||| || Sbjct 10866145 AGGCCCGGCATGAGCCCCCGCTTCTTGAGCCAGAAGATGGC-GCAGAAGGAGCCCGAGAA 10866203 Query 16318 GAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCG 16360 ||| || ||||| || | || || |||| | ||| || ||| Sbjct 10866204 GAAGATTCCCTCGACGCAGGCGAACGCGACGAGTCGCTCGGCG 10866246 >seq7 Length=35964315 Score = 82.4 bits (90), Expect = 8e-11 Identities = 109/149 (73%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258 || || ||||||||||| || || || ||||| | | ||| || |||||||| || || Sbjct 23911743 AGGCAGGCGAAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTG 23911802 Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCCGAAAA 16317 | || ||||| || || ||||| | |||||| || || ||| || || ||||| || Sbjct 23911803 AGGCCCGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGC-GCAGAAGGAGCCCGAGAA 23911861 Query 16318 GAATATACCCTCAACAGATGCAAAAGCGA 16346 ||| || |||||||| | || || |||| Sbjct 23911862 GAAGATGCCCTCAACGCAGGCGAAGGCGA 23911890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511412245666840