Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq8 89.7 4e-13 seq2 89.7 4e-13 >seq8 Length=40689132 Score = 89.7 bits (98), Expect = 4e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 20430 CCAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATAT 20489 ||| ||||| |||| ||| || | || || || ||||||||||| || || || || Sbjct 23092174 CCAGTTTTATGTTGAGAATGGGGAGCTATCCTGCCAGATGTATCAACGCTCTGCAGACAT 23092233 Query 20490 GGGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACA 20549 |||||| |||||||| ||||| |||||| ||| | || ||||| || |||||||| || Sbjct 23092234 GGGACTTGGTGTTCCATTCAACATTGCATCATATTCTCTTCTTACATACATGATTGCTCA 23092293 Query 20550 TGTT 20553 ||| Sbjct 23092294 AGTT 23092297 >seq2 Length=49199997 Score = 89.7 bits (98), Expect = 4e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 20430 CCAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATAT 20489 ||| |||||||||| ||| || | || || || ||||||||||| || || || || Sbjct 46940062 CCAGTTTTACGTTGAGAATGGGGAGCTATCCTGCCAGATGTATCAACGCTCTGCAGACAT 46940121 Query 20490 GGGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACA 20549 |||||| |||||||| ||||| |||||| || | || || ||||| |||||||| || Sbjct 46940122 GGGACTTGGTGTTCCATTCAACATTGCATCGTACTCTCTTCTCACGTACATGATTGCTCA 46940181 Query 20550 TGTT 20553 ||| Sbjct 46940182 AGTT 46940185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399182360476465