Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq7 129 1e-24 seq4 93.3 9e-14 seq5 86.0 1e-11 >seq7 Length=35964315 Score = 129 bits (142), Expect = 1e-24 Identities = 305/451 (68%), Gaps = 10/451 (2%) Strand=Plus/Plus Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317 |||||| | || | ||||| || ||||||||||| ||||| || || || | ||||| Sbjct 23911460 GTACTCCCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCAT 23911519 Query 157318 CCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTA 157377 ||| ||||||||||||||| |||||||| ||| | || ||||||| | ||| | Sbjct 23911520 CCAGTCGAATGGGTTGGCGACGTTGTACATCTTCTGGTGCCCCAGCGCCATGAGCAGGCG 23911579 Query 157378 GTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCGAC 157437 ||| || || |||| |||||||| ||||| | || | || |||| ||||||||| Sbjct 23911580 GTCGGCGACGAACTCGATGTACTGGCTCATGAGCCCGCCGTTCATTCCGACGAGCGCGAC 23911639 Query 157438 GGGAAGCGCCGACG-AAATGAATTCGCACTCAACGCTAACAGCGTGCTTGAAAATTTCAT 157496 ||| |||| || || | | ||| |||| ||| | | || |||| || || || Sbjct 23911640 GGGGAGCG-CGTCGCAGACGAACTCGCGCTCGATGTCGACGGCGTCGGCGACGATCTCGC 23911698 Query 157497 GAACTCTCTCCCGCGGC-AGCCTATTCTTGAGATGCTTGTAGATGAGAACGGAAGCCGTG 157555 | || | ||| || | ||| | | ||| | | ||||| ||| | | | || Sbjct 23911699 GGACGC-GGCCCTCGTCGAGCTTGCTGCGGAGGAGGTCGTAGAGGAG-GCAGGCGAAGTC 23911756 Query 157556 GC-GTGAAGTCCTTCGTCTCTGGCGATGAGAGAGTTCGCGAACGACAAACCCTTGAACTT 157614 || ||| || || ||||| | || |||||| ||| | ||| | | ||| | | Sbjct 23911757 GCAGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCC--GGCATG 23911814 Query 157615 CTGC--CGCTTCTTCAGCCAGTAGATGGCGCAGAACGACCCACTGAACTGCACGCCCTCC 157672 || |||||||| |||||| ||||||||||||| || || ||| | |||||| Sbjct 23911815 AGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCA 23911874 Query 157673 AGACAGGTGAAGCCGACTAGCCTCTCCGCGA 157703 | |||| |||| |||| || | ||| |||| Sbjct 23911875 ACGCAGGCGAAGGCGACGAGGCGCTCGGCGA 23911905 >seq4 Length=40407879 Score = 93.3 bits (102), Expect = 9e-14 Identities = 134/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317 ||| ||| | || | ||||| || ||||| ||||| ||||| || || || | ||||| Sbjct 10865802 GTAGTCGCCGACGCGCTTCTCGAAGAAGTTTGTCTTGCCCTGCAGCGAGATGAGCTCCAT 10865861 Query 157318 CCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTA 157377 ||| || || ||||||||| |||||||| ||| | | |||| || | ||| | Sbjct 10865862 CCAGTCAAAGGGGTTGGCGGCGTTGTACATCTTCTTGCACCCGAGAGCCATGAGCAGGCG 10865921 Query 157378 GTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCGAC 157437 ||| || || |||| |||||||| |||| | || | || |||| ||||||||| Sbjct 10865922 GTCTGCGACGAACTCGATGTACTGGCTCATTAGCGCGCCGTTCATGCCGACGAGCGCGAC 10865981 Query 157438 GGGAAGCGC 157446 ||| ||||| Sbjct 10865982 GGGGAGCGC 10865990 >seq5 Length=47252588 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 248418 CATGTACATCACCAAGCGGGACGGGCGCAAAGAAAACGTTCTCTTCGACAAAATCTCGGC 248477 ||||||| | ||||||||||||||| | || | || | ||||||||| ||| |||| Sbjct 27676000 CATGTACGTGGTCAAGCGGGACGGGCGGCAGGAGACGGTGCACTTCGACAAGATCACGGC 27675941 Query 248478 GCGCATCAAGAAGCTCTGTTATGGTCTGGAACCCA--ACTTCGTCGATCATGTGGCCATC 248535 |||| ||||||||||| ||||||| || | ||| | | ||| | ||| | || Sbjct 27675940 GCGCCTCAAGAAGCTCAGTTATGGCCT--CAGCCAGGAGCACTGCGACCCGGTGCTCGTC 27675883 Query 248536 GCCCAGAAAGTTATTTCGGGCGTCTACACCGGAGTAACAACGACAGAACTGGACACCTTA 248595 || ||||| || ||||||| |||| || ||||| || | | || ||| | Sbjct 27675882 GCGCAGAAGGTCTGCGCGGGCGTATACAAGGGCGTAACCACAAGCCAGCTCGACGAGCTC 27675823 Query 248596 GCTGCGGAGACGGCGGCGTACATGGCGATTGCACACCCCGACTACTCG 248643 || || ||||| |||||| |||| | | ||||| |||||| || Sbjct 27675822 GCCGCCGAGACCGCGGCGGCCATGACCGCGTCCCACCCGGACTACGCG 27675775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073761763678016