Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1 95.1 1e-14 seq6 89.7 5e-13 seq2 87.8 2e-12 seq4 82.4 8e-11 >seq1 Length=42145699 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||||||||| | |||| || || ||||| || ||| Sbjct 7122911 GTGGACTCCTTCTGGATGTTATAATCCGCAAGGGTGCGGCCATCCTCCAGCTGCTTGCCA 7122852 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| ||||| ||||| || || || ||||| || ||||| ||| || || Sbjct 7122851 GCAAAGATTAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTC 7122792 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||||| | ||| ||||| | || | |||||||||||||| || Sbjct 7122791 ACATTGTCAATGGTGTCGGAGCTCTCAACCTCCAAAGTGATGGTCTTGCCGGTCAATGTC 7122732 Query 139748 TTTACGAATATTTGCAT 139764 || |||||||| ||||| Sbjct 7122731 TTCACGAATATCTGCAT 7122715 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | || | || ||||||| ||||||||||| || || || |||||| | Sbjct 35309467 CCTCCTCGGAGGCGGAGGACCAAGTGAAGAGTAGACTCTTTCTGGATATTGTAATCGGCC 35309526 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||||| | ||| || ||||| || |||||| |||| || || ||||| || || || Sbjct 35309527 AATGTGCGCCCGTCCTCCAGCTGCTTTCCAGCAAAGATGAGTCGCTGCTGGTCCGGTGGG 35309586 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||| || ||||| ||| ||| || | | || | |||||| | | ||| || Sbjct 35309587 ATGCCCTCCTTGTCCTGGATCTTTGCCTTCACATTGTCAATTGTGTCAGAGCTCTCGACT 35309646 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | ||||| || || | || || || || || ||||| Sbjct 35309647 TCCAGCGTGATAGTCTTCCCAGTAAGTGTCTTCACAAAGATCTGCAT 35309693 Score = 86.0 bits (94), Expect = 6e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 139573 CTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATA 139632 ||| || || || || ||||| | ||||| | || |||||||| || || ||| | Sbjct 7122450 CTCCTTCTGGATATTGTAATCAGCAAGTGTGCGCCCATCCTCGAGCTGCTTGCCGGCAAA 7122391 Query 139633 GATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTG 139692 ||||||||| ||||| || || || ||||| || ||||| ||| || || | | Sbjct 7122390 GATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTT 7122331 Query 139693 TTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTAC 139752 || | ||||| | | ||||||||||| ||| | |||||||| || | || || || Sbjct 7122330 GTCGATGGTGTCAGAAGACTCCACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTCAC 7122271 Query 139753 GAATATTTGCAT 139764 ||| || ||||| Sbjct 7122270 GAAGATCTGCAT 7122259 Score = 86.0 bits (94), Expect = 6e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 139573 CTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATA 139632 ||| ||||| ||||||||||| | |||| | || || ||||| || || || | Sbjct 7655399 CTCCTTTTGGATGTTATAATCAGCGAGAGTGCGCCCATCCTCAAGCTGCTTGCCCGCGAA 7655340 Query 139633 GATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTG 139692 ||| || | ||||| || || || ||||| || ||||| ||| || || | | Sbjct 7655339 GATAAGCCTCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATT 7655280 Query 139693 TTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTAC 139752 || | |||||| | | ||||||||||| ||| | |||||||| ||||| || || || Sbjct 7655279 GTCGATTGTGTCAGAAGACTCCACCTCAAGGGTGATAGTCTTGCCAGTCAAGGTCTTCAC 7655220 Query 139753 GAATATTTGCAT 139764 ||| || ||||| Sbjct 7655219 GAAGATCTGCAT 7655208 Score = 82.4 bits (90), Expect = 8e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || || ||||| || |||||| |||| ||||| ||||| || || || ||||| || ||| Sbjct 7122641 TCCTCCAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTG 7122582 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | || | ||||||| | ||||||||||| ||| | Sbjct 7122581 TCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATG 7122522 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||| || | || || ||||| || ||||| Sbjct 7122521 GTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 7122487 Score = 82.4 bits (90), Expect = 8e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || || ||||| || |||||| |||| || | ||||| || || || ||||| || ||| Sbjct 7655590 TCCTCAAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTG 7655531 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | || | |||||| | | ||||||||||| ||| | Sbjct 7655530 TCCTGGATCTTGGCCTTGACATTGTCGATTGTGTCAGAAGACTCCACCTCAAGGGTGATA 7655471 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||| ||||| || || ||||| || ||||| Sbjct 7655470 GTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 7655436 Score = 82.4 bits (90), Expect = 8e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || || ||||| || |||||| |||| || | ||||| || || || ||||| || ||| Sbjct 7655818 TCCTCAAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTG 7655759 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | || | |||||| | | ||||||||||| ||| | Sbjct 7655758 TCCTGGATCTTGGCCTTGACATTGTCGATTGTGTCAGAAGACTCCACCTCAAGGGTGATA 7655699 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||| ||||| || || ||||| || ||||| Sbjct 7655698 GTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 7655664 >seq6 Length=36014550 Score = 89.7 bits (98), Expect = 5e-13 Identities = 137/192 (71%), Gaps = 5/192 (3%) Strand=Plus/Minus Query 139577 TTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATC 139636 || |||||||| ||||| | |||| ||| |||||||| || || ||| |||| Sbjct 24825488 TTCTGAATGTTGTAATCAGCAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATG 24825429 Query 139637 AGAC---GTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTA-GCTG 139692 || | | ||||| || || || ||||| || ||||| ||| || || | |||| Sbjct 24825428 AGCCTCTGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGATGCTG 24825369 Query 139693 TTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTAC 139752 | | | ||||||| | ||||||||||| ||| | |||||||| ||||| || || || Sbjct 24825368 T-CAAGGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTGCCAGTCAAGGTCTTCAC 24825310 Query 139753 GAATATTTGCAT 139764 ||| |||||||| Sbjct 24825309 GAAAATTTGCAT 24825298 >seq2 Length=49199997 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || | ||||| || ||||| ||||| ||||| ||||| Sbjct 10740303 GCCACCCCGCAGACGGAGCACCAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGC 10740244 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| || |||||||| || ||||| ||||||| || ||||| || || || Sbjct 10740243 AAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGGGG 10740184 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || ||||| ||| || || | | || | ||||| | || ||| || Sbjct 10740183 AATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATCGTGTCTGAGGACTCGAC 10740124 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| || | ||||||||||| | || || || || || ||||| Sbjct 10740123 CTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 10740076 >seq4 Length=40407879 Score = 82.4 bits (90), Expect = 8e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || ||||| | || ||||| || ||||||||||| ||| Sbjct 38277575 GCCACCGCGGAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTATAGTCGGC 38277516 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | || || ||||| || ||||| |||| || || ||||| || || || Sbjct 38277515 AAGAGTCCGGCCATCCTCCAGCTGCTTTCCAGCGAAGATGAGGCGCTGCTGGTCTGGTGG 38277456 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 |||||||| || || ||| | |||| || | | || | |||||||| | ||| | Sbjct 38277455 AATGCCTTCCTTATC-TTGAATCTTTGCCTTCACGTTATCAATTGTGTCGGAAGACTCAA 38277397 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | |||| || | ||||| || ||||| || || || || || ||||| Sbjct 38277396 CTTCAAGCGTGATGGTCTTTCCAGTCAAGGTCTTCACAAAGATCTGCAT 38277348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496061910330400