Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq7 84.2 3e-11 >seq7 Length=35964315 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/227 (69%), Gaps = 8/227 (4%) Strand=Plus/Minus Query 72177 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 72236 ||| || ||||| | || | || || | ||| |||| | | ||| |||| ||| || Sbjct 14546039 TCCACCTTGATCAACATAACATGCAGTATCATTGAAAACACGTAGCATAGGAACAATTCC 14545980 Query 72237 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296 ||| || | |||||| || || || ||||| ||| | || ||||||||| |||||| Sbjct 14545979 ATTAGAAGTACCATTTGTTCCTCGAATGTAGCTCCCAGTAGCTCGAATATTGTGAATTGA 14545920 Query 72297 TAGACCTATTCCCCCTGC-CATTTTAGAGATTA--AT-GCGCATCGTTTTAACGTATCAT 72352 | ||| ||||| || || ||||| | ||| || || ||| | | ||||||| Sbjct 14545919 GACACCAATTCCTCCAGCGCATTT----GCTTATCATAGCACATTCTGAGAGAGTATCAT 14545864 Query 72353 AGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 72399 | || ||||| ||||||||||| ||||| | || || |||||| Sbjct 14545863 AAATTCCCTCAATACTATCATCTTTCATGCAGATAAGGAAGCAGCTA 14545817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671136372826120