Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq4 188 1e-42 seq7 158 2e-33 >seq4 Length=40407879 Score = 188 bits (208), Expect = 1e-42 Identities = 586/887 (66%), Gaps = 30/887 (3%) Strand=Plus/Minus Query 124993 CCCTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCT 125052 || |||| || ||| ||| | | || ||||| | ||||| ||||| ||| |||| Sbjct 10866667 CCATGTTCCCGATCCGGTTCCCGCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCCT 10866608 Query 125053 TTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGA-GACTCGTTTG 125111 | ||||||| ||| ||||| || || ||| ||| | | | ||||| || || | Sbjct 10866607 TCTGGACGGCCGAGGAGGTGGACCTCTCCGCCGACGCGCGCCACTGGGACGAGGCGCTCT 10866548 Query 125112 ACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGA 125171 | || ||||| | || || || ||| | | |||||||| |||| |||||| || Sbjct 10866547 CCCCCGAC-GAGCGCCACTTCATCTCCCACGTGCTCGCCTTCTTCGCCGCCTCCGACGGC 10866489 Query 125172 ATCGTCAACGACAATCTGTTGACACGATTC-TCTCAAGAGTTGACCATTCCAGAGGTGTC 125230 ||||| ||| || || | | || ||| | || || || | | |||| | Sbjct 10866488 ATCGTGCTCGAGAACCTCGCGTCCCGCTTCATGTCC-GACGTGCAGGTCGCCGAGGCC-C 10866431 Query 125231 GTGCTTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACAC 125289 | || || ||||| ||||| ||| || |||||| | |||||||| |||||||| | Sbjct 10866430 GCGCCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCGGAGATGTACTCGCTGC 10866371 Query 125290 TGATTGACATGTACATTCGCGATCCGCAACGTAAAC-ACATGCTCTTTAACGCAATCGAC 125348 || | || | ||||| ||||| | || || || || ||||| ||| |||||| Sbjct 10866370 TGCTCGAGACCTACATCCGCGA-CGGCGCCGAGAAGGACCGCCTCTTCCGCGCCATCGAC 10866312 Query 125349 ACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAG 125408 || || || | |||| ||||| | |||| || || ||||| || | || || Sbjct 10866311 ACCGTCCCCGCCGTACGCCGCAAGGCCGACTGGGCCATGCGCTGGATTGACGGCGGGGAG 10866252 Query 125409 T-CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG 125467 ||||| |||| |||| || || |||||| ||| ||||| |||||||| ||||| Sbjct 10866251 CGCTTCG----CCGAGCGACTCGTCGCGTTCGCCTGCGTCGAGGGAATCTTCTTCTCGGG 10866196 Query 125468 -TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACA 125526 | || |||| ||||||| |||||||||||||| || |||||||| || || || | Sbjct 10866195 CTCCTTCTGCG-CCATCTTCTGGCTCAAGAAGCGGGGGCTCATGCCGGGCCTCACCTTCT 10866137 Query 125527 GTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTC 125586 |||||| | || || || ||||||||||| ||||| ||||| || || || Sbjct 10866136 CCAACGAGCTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGCGTGCCTCCT----- 10866082 Query 125587 GCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCG 125646 | || | || | ||| || || || | ||| ||| | | || || ||| Sbjct 10866081 -CTACGACCT-CCTCCGCAG-CAAGCTCGA-CGAGCCCCGCGTCCGCGAGATCGTCGCCG 10866026 Query 125647 ATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCA 125706 | ||||| || || | ||||||| | ||| | || || ||| | | |||| Sbjct 10866025 ACGCCGTCGACATCGAGCGAGAGTTTGTCTGCGACGCGCTCCCCGTCGCGCTCGTCGGCA 10865966 Query 125707 TGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGT 125766 ||||| || ||||||| || ||||||| ||||| || ||||| || || || | | Sbjct 10865965 TGAACGGCGCGCTAATGAGCCAGTACATCGAGTTCGTCGCAGACCGCCTGCT---CATGG 10865909 Query 125767 TGATTGGCCGC---AAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATAT 125823 | || || ||||| ||||||||| || |||||||| | ||| ||| | Sbjct 10865908 CTCTCGGGTGCAAGAAGATGTACAACGCCGCCAACCCCTTTGACTGGATGGAGCTCATCT 10865849 Query 125824 CACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 | || |||| ||||| ||||| ||||||||| ||| |||| ||| Sbjct 10865848 CGCTGCAGGGCAAGACAAACTTCTTCGAGAAGCGCGTCGGCGACTAC 10865802 >seq7 Length=35964315 Score = 158 bits (174), Expect = 2e-33 Identities = 500/757 (66%), Gaps = 26/757 (3%) Strand=Plus/Minus Query 125121 GAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAAC 125180 ||||| | || || || ||| | | |||||||| |||| |||||| || ||||| | Sbjct 23912197 GAGCGCCACTTCATCTCCCACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTGCTC 23912138 Query 125181 GACAATCTGTTGACACGATTC-TCTCAAGAGTTGACCAT-TC-CAGAGGTGTCGTGCTTT 125237 || || || | | || ||| | || || ||| || | |||| | || || || Sbjct 23912137 GAGAACCTCTCCTCCCGCTTCATGTCCGACGT---CCAGGTCGCCGAGGCG-CGCGCCTT 23912082 Query 125238 -TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGA 125296 ||||| ||||| ||| || |||||| | |||||||| |||||||| || | || Sbjct 23912081 CTACGGCTTCCAGATCGCCATCGAGAACATCCACTCGGAGATGTACTCGCTGCTTCTCGA 23912022 Query 125297 CATGTACATTCGCGATCCGCAACGTAAAC-ACATGCTCTTTAACGCAATCGACACGGTGC 125355 | ||||| ||||| | || || || || ||||| ||| |||||||| || | Sbjct 23912021 GACCTACATCCGCGA-CGGCGCCGAGAAGGACCACCTCTTCCGCGCCATCGACACCGTCC 23911963 Query 125356 CGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGT-CTTCG 125414 | | | || ||||| | |||| || || |||||||| | || || ||||| Sbjct 23911962 CCGCCGTGCGCCGCAAGGCCGACTGGGCCATGCGCTGGATCGACGGCGGGGAGCGCTTCG 23911903 Query 125415 TACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG-TAGTTT 125473 |||| | || || || |||||| ||| |||||||||||||| ||||| | || Sbjct 23911902 ----CCGAGCGCCTCGTCGCCTTCGCCTGCGTTGAGGGCATCTTCTTCTCGGGCTCCTTC 23911847 Query 125474 TGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGA 125533 |||| ||||||| ||||||||||||||||| |||||||| || || || | ||||| Sbjct 23911846 TGCG-CCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGCCTCACCTTCTCCAACGA 23911788 Query 125534 GTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTA 125593 | | || || || ||||||||||| ||||| ||||| ||| || || | || | Sbjct 23911787 GCTCATCTCCCGCGACGAGGGCCTCCACTGCGACTTCGCCTGCCTCCT------CTACGA 23911734 Query 125594 TCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGT 125653 || | ||| || || || | ||| | ||| | | || || |||| ||||| Sbjct 23911733 CCT-CCTCCGCAG-CAAGCTCGA-CGAGGGCCGCGTCCGCGAGATCGTCGCCGACGCCGT 23911677 Query 125654 GAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTG 125713 || || | ||||| | ||| | || || ||| | | || |||||| | Sbjct 23911676 CGACATCGAGCGCGAGTTCGTCTGCGACGCGCTCCCCGTCGCGCTCGTCGGAATGAACGG 23911617 Query 125714 CAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGG 125773 | ||| ||| || ||||||| ||||| || || || || || || | | || Sbjct 23911616 CGGGCTCATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCATGGCGCTGGGGCA 23911557 Query 125774 CCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGG 125833 || ||||| ||||||| | || || || || | ||| ||| || || |||| Sbjct 23911556 CCAGAAGATGTACAACGTCGCCAACCCATTCGACTGGATGGAGCTCATCTCGCTGCAGGG 23911497 Query 125834 TAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 ||||||||||| ||||||||| ||| | |||||| Sbjct 23911496 CAAGACCAACTTCTTCGAGAAGCGCGTCGGGGAGTAC 23911460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741056078288120