Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq4 89.7 4e-13 seq1 84.2 2e-11 >seq4 Length=40407879 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||| | |||||||||||| ||||| ||||| || |||| || | ||||||| Sbjct 38277784 ACCAGGTGGAGCGTAGACTCCTTCTGAATGTTGTAGTCTGCCAAGGTGCGGCCGTCCTCA 38277725 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 ||||| ||||| ||| | || || | |||||| ||| || | |||||| ||||| Sbjct 38277724 AGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGG 38277665 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 || ||| || || | | | | || ||| || ||| || | ||| ||||| || Sbjct 38277664 ATCTTCGCCTTCACATTGTCAATGGTGTCGGAAGACTCGACCTCCAGGGTGATGGTCTTC 38277605 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | || || ||||| || ||||| Sbjct 38277604 CCGGTCAGGGTCTTCACAAAGATCTGCAT 38277576 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | || |||||||| || || ||||||||||||| || | | ||||| Sbjct 37850927 CACCAGGTGGAGGGTGGACTCCTTCTGTATGTTGTAATCCGCCAAGGTGCGGCCATCCTC 37850986 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| || || || | || || | |||||| || ||| | |||||| || || Sbjct 37850987 CAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTATCCTG 37851046 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || ||| || || | | ||| || || || |||| || | ||| ||||| || Sbjct 37851047 GATCTTCGCCTTCACGTTGTCGATGGTGTCAGAAGACTCCACCTCCAAGGTGATGGTCTT 37851106 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | ||| |||||||| || ||||| Sbjct 37851107 GCCAGTAAGAGTCTTGACAAAGATCTGCAT 37851136 >seq1 Length=42145699 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 |||||||| | | | |||| ||| | |||||||| || || ||||||||||| ||| Sbjct 35309467 CCTCCTCGGAGGCGGAGGACCAAGTGAAGAGTAGACTCTTTCTGGATATTGTAATCGGCC 35309526 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| ||||||||||||| || || ||| | || |||| |||||| ||| || Sbjct 35309527 AATGTGCGCCCGTCCTCCAGCTGCTTTCCAGCAAAGATGAGTCGCTGCTGGTCCGGTGGG 35309586 Query 18935 ACGCCCTCTTTGTC 18948 | |||||| ||||| Sbjct 35309587 ATGCCCTCCTTGTC 35309600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414571097271778