Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1 152 1e-31 seq4 136 9e-27 seq2 125 2e-23 seq5 122 2e-22 >seq1 Length=42145699 Score = 152 bits (168), Expect = 1e-31 Identities = 174/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| |||| || | ||| || | || | ||||| || ||||| ||||| ||||| Sbjct 35309692 ATTCCTCCTCGAAGGCGAAGGACCAAGTGAAGAGTAGACTCCTTCTGGATATTGTAGTCT 35309751 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || || | || || || || || ||||||||||| || |||||||| || ||||| Sbjct 35309752 GCCAGCGTACGGCCATCCTCAAGCTGCTTTCCAGCAAAGATGAGCCTCTGCTGGTCAGGT 35309811 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508 || ||||| || || |||||||||||||| || ||||| || | ||| ||| || | || Sbjct 35309812 GGGATTCCCTCCTTGTCCTGAATCTTTGCCTTGACATTGTCAATGGTGTCG-GAGCTCTC 35309870 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| ||||| || || || |||||||||||||| Sbjct 35309871 AACCTCAAGAGTTATCGTCTTCCCAGTGAGGGTCTTCACAAATATCTGCAT 35309921 Score = 134 bits (148), Expect = 3e-26 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || || || | || || || ||||| || ||||||||| Sbjct 35309920 ATGCCACCCCTCAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTATAGTCA 35309979 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | ||| || | ||| || || || || || |||||||| || |||||||| || || || Sbjct 35309980 GCTAGCGTACGACCATCCTCAAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCCGGG 35310039 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508 || || || || |||||||||||||| || || ||||| || | ||| ||| || | || Sbjct 35310040 GGGATACCCTCCTTATCCTGAATCTTGGCCTTGACATTGTCAATGGTGTCG-GAGCTCTC 35310098 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| || || || || || ||||| |||||||| Sbjct 35310099 AACCTCCAGAGTGATGGTCTTCCCTGTGAGAGTCTTGACAAAGATCTGCAT 35310149 Score = 122 bits (134), Expect = 2e-22 Identities = 148/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| |||||||| ||||| || || | | || | ||||| || || || |||||| Sbjct 35309497 GTAGACTCTTTCTGGATATTGTAATCGGCCAATGTGCGCCCGTCCTCCAGCTGCTTTCCA 35309556 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||| || || || || || || || || ||||| |||||||| || Sbjct 35309557 GCAAAGATGAGTCGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTC 35309616 Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 ||||| || | || || || | || || || || || |||||||| ||||||||||| Sbjct 35309617 ACATTGTCAATTGTGTC-AGAGCTCTCGACTTCCAGCGTGATAGTCTTCCCAGTAAGTGT 35309675 Query 104542 TTTTACAAATATCTGCATT 104560 || ||||| ||||||||| Sbjct 35309676 CTTCACAAAGATCTGCATT 35309694 Score = 102 bits (112), Expect = 2e-16 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 ||||| || || | || || || ||||| || ||||| || | || || | || || Sbjct 7122926 AGTACCAGGTGGAGGGTGGACTCCTTCTGGATGTTATAATCCGCAAGGGTGCGGCCATCC 7122867 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || |||||||| ||||| | ||| || || || || || || || || ||| Sbjct 7122866 TCCAGCTGCTTGCCAGCAAAGATTAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 7122807 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGT 104526 || ||||| || || ||||| || | ||| ||| || | || ||||| | || || || Sbjct 7122806 TGGATCTTGGCCTTCACATTGTCAATGGTGTCGG-AGCTCTCAACCTCCAAAGTGATGGT 7122748 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| || || | ||| || || ||||||||||| Sbjct 7122747 CTTGCCGGTCAATGTCTTCACGAATATCTGCAT 7122715 Score = 89.7 bits (98), Expect = 1e-12 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| ||||| ||||| | || || | || || || ||||| || || Sbjct 7135603 GTGGACTCCTTCTGGATATTGTAGTCCGCCAGGGTGCGGCCATCCTCCAGTTGCTTGCCG 7135544 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| || || || || || || || || ||||| ||||| || || Sbjct 7135543 GCGAAGATCAGACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTC 7135484 Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 ||||| || | ||| ||| || | || ||||| | || || ||||| || || | || Sbjct 7135483 ACATTGTCAATGGTGTCGG-AGCTCTCAACCTCCAAAGTGATGGTCTTGCCGGTCAAAGT 7135425 Query 104542 TTTTACAAATATCTGCAT 104559 || || ||||||||||| Sbjct 7135424 CTTCACGAATATCTGCAT 7135407 >seq4 Length=40407879 Score = 136 bits (150), Expect = 9e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | ||| || || || | ||||| || ||||||||||| |||||| Sbjct 38277121 ATGCCACCCCTGAGGCGAAGGACGAGGTGAAGAGTAGACTCCTTCTGAATATTGTAGTCA 38277062 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | | || | || || || || || || |||||||| || | || ||| || || ||| Sbjct 38277061 GCCAAGGTACGGCCATCCTCAAGCTGCTTCCCAGCAAAGATCAACCGCTGCTGGTCCGGA 38277002 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||||||||| || || ||||| || | || || | || Sbjct 38277001 GGGATACCTTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATCGTGTCAGAGGACTCG 38276942 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || ||||||||||| ||||| || || || ||||| |||||||| Sbjct 38276941 ACCTCAAGAGTAATAGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 38276892 Score = 125 bits (138), Expect = 2e-23 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || || || || || || | || || || || || || ||||||||| Sbjct 38276893 ATGCCACCCCTGAGTCTGAGCACAAGGTGGAGGGTGGACTCCTTTTGGATGTTATAGTCA 38276834 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || || | ||||| || || || || |||||||| || || | ||| || || || Sbjct 38276833 GCAAGTGTGCGCCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGC 38276774 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGG-TTC 104508 || || || || || ||||| ||||| || || ||||| || | ||||| | ||| ||| Sbjct 38276773 GGGATCCCCTCCTTGTCCTGGATCTTCGCCTTGACATTGTCAATTGTATC-CGAGGATTC 38276715 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| || || ||||| || |||||||||||||| Sbjct 38276714 AACCTCGAGGGTGATGGTCTTGCCTGTGAGTGTCTTCACAAATATCTGCAT 38276664 Score = 116 bits (128), Expect = 9e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || |||||||| |||||||| | ||||| | || || || || || |||||| Sbjct 38277544 GTGGACTCCTTCTGAATGTTATAGTCGGCAAGAGTCCGGCCATCCTCCAGCTGCTTTCCA 38277485 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| || || || || || ||||| ||||| ||||||||||| || Sbjct 38277484 GCGAAGATGAGGCGCTGCTGGTCTGGTGGAATGCCTTCCTTATCTTGAATCTTTGCCTTC 38277425 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | || ||| || || || || || || || ||||| ||||| | || Sbjct 38277424 ACGTTATCAATTGTGTCGGAAGACTCAACTTCAAGCGTGATGGTCTTTCCAGTCAAGGTC 38277365 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 38277364 TTCACAAAGATCTGCAT 38277348 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || || || | || ||||| ||||||||||| || ||| Sbjct 38277349 ATGCCTCCCCTGAGGCGGAGGACGAGGTGGAGAGTGGATTCCTTCTGAATATTGTAATCA 38277290 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | | || | || || || || || || |||||||| || | || ||| || || ||| Sbjct 38277289 GCCAAGGTACGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAACCGCTGCTGGTCCGGA 38277230 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||||||||| || || ||||| || | || || | || Sbjct 38277229 GGGATGCCTTCCTTGTCCTGAATCTTCGCCTTGACATTGTCGATTGTGTCAGAGGACTCG 38277170 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || |||||||| ||||| | || || ||||| || ||||| Sbjct 38277169 ACTTCAAGGGTGATAGTCTTGCCAGTTAAGGTCTTGACAAAGATTTGCAT 38277120 Score = 98.7 bits (108), Expect = 2e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||||| || || | || || || || || || ||| Sbjct 37851852 GTGGACTCCTTCTGTATGTTGTAGTCAGCAAGGGTACGGCCATCCTCAAGCTGCTTGCCA 37851911 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| || || ||||| || || || || ||||| ||||| || || Sbjct 37851912 GCGAAGATGAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTC 37851971 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| || | || ||||| || || || ||||| || || || || Sbjct 37851972 ACGTTGTCAATGGTGTCAGACGACTCAACCTCCAGAGTGATGGTCTTGCCGGTGAGGGTC 37852031 Query 104543 TTTACAAATATCTGCAT 104559 || |||||||||||||| Sbjct 37852032 TTCACAAATATCTGCAT 37852048 Score = 96.9 bits (106), Expect = 8e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 104331 TTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390 |||| || || ||||| || || | ||| | || || || |||||||| || ||||||| Sbjct 31506279 TTCCACCCCTGAGCCTCAGGACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAGTCAG 31506220 Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450 || ||||| || ||||| | ||| || ||||||||||| ||||| || || || || | Sbjct 31506219 CTAACGTTCTCCCATCTTCCAATTGCTTACCAGCAAAAATCAGCCTTTGCTGGTCTGGGG 31506160 Query 104451 GTATTCCTTCTTTATCCTGAA 104471 | || || || || ||||||| Sbjct 31506159 GAATGCCCTCCTTGTCCTGAA 31506139 >seq2 Length=49199997 Score = 125 bits (138), Expect = 2e-23 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || ||||| || || || || | || || || ||||| || || ||||| Sbjct 10739621 ATGCCTCCCCTGAGCCTGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCC 10739562 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | ||||| | || || || || || ||||||||||| || |||||||| || || || Sbjct 10739561 GCGAGAGTGCGGCCATCCTCGAGCTGCTTTCCAGCAAAGATGAGCCTCTGCTGGTCCGGG 10739502 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGG-TTC 104508 || || ||||| || ||||| ||||| || || || || || | ||| || | ||| || Sbjct 10739501 GGAATGCCTTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCAATGGTGTC-CGAGGACTC 10739443 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| || || || || || ||||| |||||||| Sbjct 10739442 AACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTAACAAAGATCTGCAT 10739392 >seq5 Length=47252588 Score = 122 bits (134), Expect = 2e-22 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || ||||| || || | || | || || || ||||| || || |||||| Sbjct 6910261 ATGCCTCCCCTGAGCCTGAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCA 6910202 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || || | || || || || || ||||||||||| || |||||||| || || || Sbjct 6910201 GCGAGGGTGCGGCCATCCTCGAGCTGCTTTCCAGCAAAGATGAGCCTCTGCTGGTCCGGG 6910142 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGG-TTC 104508 || || ||||| || ||||| ||||| || || || || || | ||| || | ||| || Sbjct 6910141 GGGATGCCTTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCAATGGTGTC-CGAGGACTC 6910083 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| || || || || || ||||| |||||||| Sbjct 6910082 GACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 6910032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151393428477596