Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq9 125 6e-24 >seq9 Length=58970307 Score = 125 bits (138), Expect = 6e-24 Identities = 172/236 (73%), Gaps = 6/236 (3%) Strand=Plus/Plus Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCT 5560 ||||| ||||| || || || || |||| | | || |||| ||| | |||||||| Sbjct 9417927 ACGCCGGTGGATCCAAACCCTCCCTCGCCACGCACGGTGGCGTCGAGGTCCTCCACCTCT 9417986 Query 5561 TCCACATCGGGGAACGC-AGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTT 5619 | || || || ||| | | | |||| ||||| |||||| || ||||| || | ||| Sbjct 9417987 GCGACTTCCGGCGTCGCGATCAC-CTCGATGATCATCTGCGCGATCCGGTCACCGGGCTT 9418045 Query 5620 TACCTCGAAATCGTTGTGGCCGAA--GTTGAACAGCACCACGCCCACGTTGCCGCGGTAG 5677 || |||| || | |||| |||||| || | || || ||| |||||||||| Sbjct 9418046 GACGGCGAAGTCCACAT--CCGAGTGGTTGAAGAGGATGACCCCGACGGGGCCGCGGTAG 9418103 Query 5678 TCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGA 5733 |||||||| |||||||| ||||||||||||||| ||||||| | ||||||||| || Sbjct 9418104 TCGGCGTCGATCACGCCGGCGCCCACGTCGATGGAGTGCTTCAGCGCCAGGCCCGA 9418159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430052633685944