Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq2 122 5e-23 seq5 116 2e-21 seq1 116 2e-21 seq3 113 2e-20 seq8 111 8e-20 seq7 111 8e-20 seq9 107 1e-18 seq6 107 1e-18 >seq2 Length=49199997 Score = 122 bits (134), Expect = 5e-23 Identities = 91/105 (87%), Gaps = 3/105 (3%) Strand=Plus/Minus Query 11425 AGGGAAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACC 11484 ||||||| | | || ||||||||| ||||||||||||| | | |||||||| ||||| Sbjct 35074909 AGGGAAAAA--GGATGGATAAAAAAT-AAATTGGCCCATGCAGGTCTCGAACCTGCGACC 35074853 Query 11485 TTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||||||| ||||||||||||||| |||| Sbjct 35074852 TTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 35074808 Score = 107 bits (118), Expect = 1e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 30296828 AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 30296887 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 30296888 CAACTGAGCTAATAGGCC 30296905 Score = 105 bits (116), Expect = 3e-18 Identities = 77/90 (86%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| || ||||| ||| | | |||||||| ||||||||||||||||||||||||| Sbjct 46403007 AAAAAAAAACATGGCCTATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 46402948 Query 11505 CTCTRACCAACTGAGCTAATGGGCCGTCGA 11534 |||| ||||||||||||||| |||| |||| Sbjct 46402947 CTCTAACCAACTGAGCTAATAGGCCTTCGA 46402918 >seq5 Length=47252588 Score = 116 bits (128), Expect = 2e-21 Identities = 91/109 (83%), Gaps = 3/109 (3%) Strand=Plus/Minus Query 11429 AAATATAGAATTAATAAAAAATCAAA---TTGGCCCATGAAAGGATCGAACCTTCGACCT 11485 ||| | ||||| | ||||| | ||| |||||||||| | | |||||||| |||||| Sbjct 44036234 AAAAAGAGAATCAGAAAAAACTAAAAACTTTGGCCCATGCAGGTCTCGAACCTGCGACCT 44036175 Query 11486 TCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCGTCGA 11534 ||||||||||||||||||||||| ||||||||||||||| |||||| || Sbjct 44036174 TCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCCGTTGA 44036126 Score = 109 bits (120), Expect = 3e-19 Identities = 76/86 (88%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| | |||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 4098333 AAAAAATTGA-TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 4098275 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| ||||||||||||||| |||| Sbjct 4098274 GCTCTAACCAACTGAGCTAATAGGCC 4098249 Score = 109 bits (120), Expect = 3e-19 Identities = 77/88 (88%), Gaps = 3/88 (3%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| | ||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 30582238 AAAAAATTA---TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 30582294 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCGT 11531 ||||| ||||||||||||||| |||||| Sbjct 30582295 GCTCTAACCAACTGAGCTAATAGGCCGT 30582322 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 39973541 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 39973482 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||| ||||| Sbjct 39973481 TGAGCTAATAGGCCG 39973467 >seq1 Length=42145699 Score = 116 bits (128), Expect = 2e-21 Identities = 77/86 (90%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| || ||||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 29184109 AAAAAAACATATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 29184050 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| ||||||||||||||| |||| Sbjct 29184049 GCTCTAACCAACTGAGCTAATAGGCC 29184024 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11451 CAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRA 11510 ||| || ||||||| | | |||||||| ||||||||||||||||||||||||||||| | Sbjct 29161027 CAACTTCGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAA 29160968 Query 11511 CCAACTGAGCTAATGGGC 11528 |||||||||||||| ||| Sbjct 29160967 CCAACTGAGCTAATAGGC 29160950 Score = 89.7 bits (98), Expect = 3e-13 Identities = 67/79 (85%), Gaps = 4/79 (5%) Strand=Plus/Minus Query 11451 CAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRA 11510 ||| || ||||||| | |||||| | ||||||||| ||||||||||||||||||| | Sbjct 29166045 CAACTTAGCCCATGCA----TCGAACATGCGACCTTCGTGTTATTAGCACGACGCTCTAA 29165990 Query 11511 CCAACTGAGCTAATGGGCC 11529 |||||||||||||| |||| Sbjct 29165989 CCAACTGAGCTAATAGGCC 29165971 Score = 86.0 bits (94), Expect = 3e-12 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||||| | |||||||| |||| ||||||||||||||||||||||| | ||| Sbjct 29193285 TGGCCCATGAAGGTCTCGAACCTACGACTTTCGCGTTATTAGCACGACGCTCGAATCAAT 29193226 Query 11516 TGAGCTAAT 11524 ||||||||| Sbjct 29193225 TGAGCTAAT 29193217 >seq3 Length=50651951 Score = 113 bits (124), Expect = 2e-20 Identities = 88/106 (83%), Gaps = 5/106 (5%) Strand=Plus/Minus Query 11429 AAATATAGAATTAATAAAAAATCAAA-----TTGGCCCATGAAAGGATCGAACCTTCGAC 11483 ||| | ||| | ||| |||||| ||| |||||||||| | | |||||||| |||| Sbjct 15525182 AAAAAAAGATTAAATGAAAAATAAAAAAGCTTTGGCCCATGCAGGTCTCGAACCTGCGAC 15525123 Query 11484 CTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||||||||||| ||||||||||||||| |||| Sbjct 15525122 CTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 15525077 >seq8 Length=40689132 Score = 111 bits (122), Expect = 8e-20 Identities = 78/89 (88%), Gaps = 3/89 (3%) Strand=Plus/Plus Query 11445 AAAAATCAA---ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 |||||| || ||||||||||| | | |||||||| |||||||||||||||||||||| Sbjct 1125753 AAAAATTAATTGATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACG 1125812 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||| ||||||||||||||| ||||| Sbjct 1125813 ACGCTCTAACCAACTGAGCTAATAGGCCG 1125841 >seq7 Length=35964315 Score = 111 bits (122), Expect = 8e-20 Identities = 85/101 (84%), Gaps = 3/101 (3%) Strand=Plus/Plus Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 ||| ||| || | | |||||| ||||||||||| | | |||||||| ||||||||| Sbjct 24638633 AAAAATACAAAAATTTAAAAAT---ATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCG 24638689 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||| ||||||||||||||| |||| Sbjct 24638690 CGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 24638730 Score = 109 bits (120), Expect = 3e-19 Identities = 78/89 (88%), Gaps = 1/89 (1%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || ||||||| | |||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 22472446 AAAAAAAAATTGA-TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 22472388 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||| |||| Sbjct 22472387 GACGCTCTAACCAACTGAGCTAATAGGCC 22472359 Score = 109 bits (120), Expect = 3e-19 Identities = 77/88 (88%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 11444 AAAAAATCAAAT--TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 |||||| |||| ||||||||| | | |||||||| |||||||||||||||||||||| Sbjct 24169838 AAAAAAAAAAATGATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACG 24169897 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| ||||||||||||||| |||| Sbjct 24169898 ACGCTCTAACCAACTGAGCTAATAGGCC 24169925 Score = 109 bits (120), Expect = 3e-19 Identities = 79/91 (87%), Gaps = 1/91 (1%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || ||||||| | |||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 35837535 AAAAAAAAATTGA-TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 35837477 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCGT 11531 |||||||| |||| |||||||||| |||||| Sbjct 35837476 GACGCTCTAACCAGCTGAGCTAATAGGCCGT 35837446 >seq9 Length=58970307 Score = 107 bits (118), Expect = 1e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 ||||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| Sbjct 44321355 ATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCA 44321296 Query 11514 ACTGAGCTAATGGGCC 11529 ||||||||||| |||| Sbjct 44321295 ACTGAGCTAATAGGCC 44321280 Score = 95.1 bits (104), Expect = 6e-15 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 11451 CAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRA 11510 ||| || ||||||| | | |||||||| ||||||| || |||||||||||||||||| | Sbjct 47642056 CAACTTCGCCCATGCAGGTCTCGAACCTGCGACCTTTGCATTATTAGCACGACGCTCTAA 47641997 Query 11511 CCAACTGAGCTAATGGGCC 11529 |||||||||||||| |||| Sbjct 47641996 CCAACTGAGCTAATAGGCC 47641978 >seq6 Length=36014550 Score = 107 bits (118), Expect = 1e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 31727479 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 31727420 Query 11515 CTGAGCTAATGGGCCG 11530 |||||||||| ||||| Sbjct 31727419 CTGAGCTAATAGGCCG 31727404 Score = 104 bits (114), Expect = 1e-17 Identities = 75/86 (87%), Gaps = 1/86 (1%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| | ||| |||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 28082318 AAAAAACTAAT-GGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 28082376 Query 11505 CTCTRACCAACTGAGCTAATGGGCCG 11530 |||| ||||||||||||||| || || Sbjct 28082377 CTCTAACCAACTGAGCTAATAGGACG 28082402 Lambda K H 0.638 0.409 0.919 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261490126006612