Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq6 132 8e-27 seq9 131 3e-26 seq2 129 9e-26 seq7 125 1e-24 seq3 123 4e-24 seq5 118 2e-22 seq1 114 2e-21 >seq6 Length=36014550 Score = 132 bits (146), Expect = 8e-27 Identities = 175/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 21487235 CGCCAAGCGCCACCGCAAGGTGCTCCGCGACAACATCCAGGGCATCACCAAGCCGGCGAT 21487294 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| | ||||| | | || || || ||||| |||| || | |||| || |||| Sbjct 21487295 CCGGAGGCTGGCGAGGAGGGGCGGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 21487354 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | |||||||||||| ||| ||| |||| || || || ||| ||||| Sbjct 21487355 CCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGA 21487414 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| |||||| |||||||| ||||||| || | ||||| || || Sbjct 21487415 GCACGCCCGCCGCAAGACCGTCACCGCCATGGATGTCGTCTACGCGCTCAAACGCCAGGG 21487474 Query 16672 CCG 16674 ||| Sbjct 21487475 CCG 21487477 >seq9 Length=58970307 Score = 131 bits (144), Expect = 3e-26 Identities = 177/244 (73%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | || || || || |||||||| |||||||||||||| || | Sbjct 57783965 CGCGAAGCGGCACCGCAAGGTC-CTCCGCGACAACATCCAGGGAATCACCAAGCCGGCGA 57783907 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| | ||||| || | || || || ||||| |||| || || |||| || |||| Sbjct 57783906 TCCGGAGGCTGGCGCGCAGGGGCGGCGTGAAGCGCATCTCCGGGCTGATCTACGAGGAGA 57783847 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || | |||||||| ||| ||| ||| |||| ||| || || ||| || | Sbjct 57783846 CCCGCGGCGTGCTCAAGATCTTTCTCGAGAACGTCATCCGTGACGCCGTCACCTACACGG 57783787 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || ||||| |||||| ||||||| ||||||| || | || || || | Sbjct 57783786 AGCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGG 57783727 Query 16671 GCCG 16674 | || Sbjct 57783726 GGCG 57783723 Score = 114 bits (126), Expect = 2e-21 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||| ||||| || ||||| | |||| | | ||| Sbjct 40155257 CTCCGCGACAACATCCAGGGCATCACGAAGCCGGCGATCCGGAGGTTGGCGAGGAGGGGT 40155316 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| || || |||| || |||| ||| | || | ||||||||| Sbjct 40155317 GGCGTGAAGCGCATCTCCGGCCTGATCTACGAGGAGACTCGCGGCGTGCTCAAGATCTTC 40155376 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || || | ||| || |||||||| || ||||| ||| Sbjct 40155377 CTCGAGAACGTCATCCGCGACGCCGTTACCTACACGGAGCACGCCCGCCGCAAGACCGTC 40155436 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| ||||||| ||||||| || | || || || ||||| Sbjct 40155437 ACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGGCCG 40155477 >seq2 Length=49199997 Score = 129 bits (142), Expect = 9e-26 Identities = 161/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||| ||||| || ||||| | ||||| ||| | || Sbjct 31603254 CTCCGCGACAACATCCAGGGGATCACGAAGCCGGCGATCCGGAGGCTGGCCCGTAGGGGC 31603313 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| || | |||| || |||| || | || | ||||||||| Sbjct 31603314 GGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGACCCGCGGCGTCCTCAAGATCTTC 31603373 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || || || ||| ||||||||||| | || ||||| ||| Sbjct 31603374 CTCGAGAACGTCATCCGCGACGCAGTCACCTACACCGAGCACGCCAGGCGCAAGACCGTC 31603433 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| ||||||| ||||||| || | || || || ||||| Sbjct 31603434 ACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGGCCG 31603474 Score = 122 bits (134), Expect = 1e-23 Identities = 174/245 (71%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | ||||| || |||||||| || ||||| ||||| || || Sbjct 39455625 CGCGAAGCGTCACCGGAAGGTGCTTCGCGACAACATCCAGGGGATCACGAAGCCGGCGAT 39455566 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| | ||||| | | || || || ||||| |||| || || |||| || |||| Sbjct 39455565 CCGGAGGCTGGCGAGGAGGGGCGGCGTGAAGCGCATCTCCGGGCTGATCTACGAGGAGAC 39455506 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | |||||||||||| ||| ||| |||| || || || ||| || || Sbjct 39455505 CCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACGGA 39455446 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| |||||| ||||||| ||||||| || | || || || || Sbjct 39455445 GCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGG 39455386 Query 16672 CCGTA 16676 |||| Sbjct 39455385 TCGTA 39455381 >seq7 Length=35964315 Score = 125 bits (138), Expect = 1e-24 Identities = 171/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| | ||||| | | || Sbjct 28290195 CTCCGCGACAACATCCAGGGCATCACCAAGCCGGCGATCCGGAGGCTGGCCAGGAGGGGC 28290136 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || |||||||| |||| || | |||| || |||| || | || | ||||||||| Sbjct 28290135 GGCGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGACCCGCGGAGTGCTCAAGATCTTC 28290076 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || || || ||| ||||||||||| || ||||| ||| Sbjct 28290075 CTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCCCGCCGCAAGACCGTC 28290016 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||| ||||||| ||||||| || | || || || ||||| | | || || ||||| Sbjct 28290015 ACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGGCCGCACCCTCTACGGCTTTGG 28289957 >seq3 Length=50651951 Score = 123 bits (136), Expect = 4e-24 Identities = 160/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| || ||||| | | || Sbjct 17062190 CTCCGCGACAACATCCAGGGCATCACCAAGCCGGCGATCCGGCGGCTGGCGAGGAGGGGC 17062131 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| || | |||| || |||| || | || | ||||||||| Sbjct 17062130 GGCGTGAAGCGCATCTCCGGGCTCATCTACGAGGAGACCCGCGGCGTACTCAAGATCTTC 17062071 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || || || ||| ||||||||||| || ||||| ||| Sbjct 17062070 CTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCCCGCCGCAAGACCGTC 17062011 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| ||||||| ||||||| || | || || || ||||| Sbjct 17062010 ACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGGCCG 17061970 >seq5 Length=47252588 Score = 118 bits (130), Expect = 2e-22 Identities = 174/244 (71%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| | || || || || || ||||| || ||||| ||||| || | Sbjct 40868377 CGCGAAGCGTCACCGCAAGGTC-CTCCGCGACAATATCCAGGGCATCACGAAGCCGGCGA 40868435 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| | ||||| | | || || || ||||| |||| || | |||| || |||| Sbjct 40868436 TCCGGAGGCTGGCGAGGAGGGGCGGCGTGAAGCGCATCTCCGGGCTCATCTACGAGGAGA 40868495 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || | |||||||||||| ||| ||| |||| || || || ||| || | Sbjct 40868496 CCCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACGG 40868555 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || ||||| |||||| ||||||| ||||||| || | || || || | Sbjct 40868556 AGCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGG 40868615 Query 16671 GCCG 16674 |||| Sbjct 40868616 GCCG 40868619 >seq1 Length=42145699 Score = 114 bits (126), Expect = 2e-21 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||| ||||| || ||||| | ||||| | | || Sbjct 34773152 CTCCGCGACAACATCCAGGGCATCACGAAGCCGGCGATCCGGAGGCTGGCGAGGAGGGGC 34773093 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| || | |||| || |||| || | || | ||||||||| Sbjct 34773092 GGCGTGAAGCGCATCTCCGGGCTCATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTC 34773033 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || || || ||| || |||||||| || ||||| ||| Sbjct 34773032 CTCGAGAACGTCATCCGCGACGCCGTCACCTACACGGAGCACGCCCGCCGCAAGACCGTC 34772973 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| ||||||| ||||||| || | || ||||| ||||| Sbjct 34772972 ACCGCCATGGACGTCGTCTACGCGCTCAAGCGTCAGGGCCG 34772932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074891878541