Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq337 549 3e-151 seq14 549 3e-151 seq7 269 4e-67 >seq337 Length=135516 Score = 549 bits (608), Expect = 3e-151 Identities = 716/985 (73%), Gaps = 4/985 (0%) Strand=Plus/Minus Query 211570 TTCTGCGACTGGGTAAC-ATCAACAAACAACAGAATCTATGTTGGTTGGTTTGGTGTTCT 211628 |||||| ||||| |||| | || | || ||| | | || | || ||||| |||||| | Sbjct 1626 TTCTGCAACTGGATAACTAGCACCGAA-AACCGTCTTTACATCGGATGGTTCGGTGTTTT 1568 Query 211629 TATGATCCCATGTCTTCTAG-CTGCAACAACATGCTTTATCGTAGCATTCATCGCAGCAC 211687 |||||||| | ||| | | | ||||| | ||||| | || |||||||| || | Sbjct 1567 GATGATCCC-TACCTTATTGACCGCAACTTCCGTATTTATTATCGCCTTCATCGCTGCTC 1509 Query 211688 CTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTCATTCATGTATGGTAACA 211747 |||| || ||||| || || || ||||| || || ||||||| || | ||||| |||| Sbjct 1508 CTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACA 1449 Query 211748 ACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTTTACACTTCTATCCTA 211807 | || || |||||||| || |||| |||| || ||||| || || || || || | Sbjct 1448 ATATTATTTCTGGTGCTATTATTCCTACTTCTGCGGCGATCGGATTGCATTTTTACCCAA 1389 Query 211808 TCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGTCCTTACCAGTTGGTAA 211867 | |||||||| ||| || ||||||| ||| | |||||||| |||||||| || | | Sbjct 1388 TTTGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTG 1329 Query 211868 TCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGACAGTGGGAACTTTCATACC 211927 | | |||||| | | || | | || ||||| | ||||||||||| | || Sbjct 1328 TTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCC 1269 Query 211928 GTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACCTGTATCAGCAGCTTTCG 211987 || | |||||||| |||||||| |||||| |||||||| ||||| |||| ||| | Sbjct 1268 GTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTG 1209 Query 211988 CTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGACGGTATGCCTTTAGGTA 212047 |||| ||| | |||| || | ||||| || ||||| || |||||||||||||| | Sbjct 1208 CTGTTTTCTTGATTTATCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAA 1149 Query 212048 TATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACATAACATCCTTATGCACC 212107 |||| || || |||||||| ||| | |||||||| || || || |||||||||||||| | Sbjct 1148 TATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCGGAGCACAACATCCTTATGCATC 1089 Query 212108 CATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTATTCTCTGCTATGCACG 212167 |||| || ||| |||||| || ||| | ||||| || | ||||| ||||||||| | Sbjct 1088 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATG 1029 Query 212168 GTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGTTTAGATTCACAGAACTATG 212227 |||| | || || ||| | ||| | |||||||||| || || || | | Sbjct 1028 GTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAATGAGTCTGCTAATGAGG 969 Query 212228 GTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGCTGCACATGGATACTTCG 212287 ||||||| || || |||||||||||||| |||||||| || ||||| || || || || | Sbjct 968 GTTACAAATTTGGTCAAGAAGAAGAGACTTATAACATTGTGGCTGCTCACGGTTATTTTG 909 Query 212288 GTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGAAGTTTACACTTCTTCCTCG 212347 || || | |||||||| ||||| ||||||||| | ||||||||||||| | | Sbjct 908 GTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTGG 849 Query 212348 CATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTCA 212407 | | |||||||| | | | ||||| || || | ||||| | || |||||||||| Sbjct 848 CTGCTTGGCCTGTAGTAGGGATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCATTCA 789 Query 212408 ACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCATCAGGTAAGGTTGTTCCTA 212467 |||||||||||||||| ||||||||||| || |||||| |||| ||| || || Sbjct 788 ACCTAAATGGATTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGCGTTATTAATA 729 Query 212468 CTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTTATGCACGAAAGAAATG 212527 |||||| |||| | | ||| | || || |||||||||||||| ||||||||| | |||| Sbjct 728 CTTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATG 669 Query 212528 CACACAACTTCCCACTTGACTTAGC 212552 | ||||||||||| || ||| |||| Sbjct 668 CTCACAACTTCCCTCTAGACCTAGC 644 >seq14 Length=147140 Score = 549 bits (608), Expect = 3e-151 Identities = 716/985 (73%), Gaps = 4/985 (0%) Strand=Plus/Minus Query 211570 TTCTGCGACTGGGTAAC-ATCAACAAACAACAGAATCTATGTTGGTTGGTTTGGTGTTCT 211628 |||||| ||||| |||| | || | || ||| | | || | || ||||| |||||| | Sbjct 81971 TTCTGCAACTGGATAACTAGCACCGAA-AACCGTCTTTACATCGGATGGTTCGGTGTTTT 81913 Query 211629 TATGATCCCATGTCTTCTAG-CTGCAACAACATGCTTTATCGTAGCATTCATCGCAGCAC 211687 |||||||| | ||| | | | ||||| | ||||| | || |||||||| || | Sbjct 81912 GATGATCCC-TACCTTATTGACCGCAACTTCCGTATTTATTATCGCCTTCATCGCTGCTC 81854 Query 211688 CTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTCATTCATGTATGGTAACA 211747 |||| || ||||| || || || ||||| || || ||||||| || | ||||| |||| Sbjct 81853 CTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACA 81794 Query 211748 ACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTTTACACTTCTATCCTA 211807 | || || |||||||| || |||| |||| || ||||| || || || || || | Sbjct 81793 ATATTATTTCTGGTGCTATTATTCCTACTTCTGCGGCGATCGGATTGCATTTTTACCCAA 81734 Query 211808 TCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGTCCTTACCAGTTGGTAA 211867 | |||||||| ||| || ||||||| ||| | |||||||| |||||||| || | | Sbjct 81733 TTTGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTG 81674 Query 211868 TCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGACAGTGGGAACTTTCATACC 211927 | | |||||| | | || | | || ||||| | ||||||||||| | || Sbjct 81673 TTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCC 81614 Query 211928 GTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACCTGTATCAGCAGCTTTCG 211987 || | |||||||| |||||||| |||||| |||||||| ||||| |||| ||| | Sbjct 81613 GTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTG 81554 Query 211988 CTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGACGGTATGCCTTTAGGTA 212047 |||| ||| | |||| || | ||||| || ||||| || |||||||||||||| | Sbjct 81553 CTGTTTTCTTGATTTATCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAA 81494 Query 212048 TATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACATAACATCCTTATGCACC 212107 |||| || || |||||||| ||| | |||||||| || || || |||||||||||||| | Sbjct 81493 TATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCGGAGCACAACATCCTTATGCATC 81434 Query 212108 CATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTATTCTCTGCTATGCACG 212167 |||| || ||| |||||| || ||| | ||||| || | ||||| ||||||||| | Sbjct 81433 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATG 81374 Query 212168 GTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGTTTAGATTCACAGAACTATG 212227 |||| | || || ||| | ||| | |||||||||| || || || | | Sbjct 81373 GTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAATGAGTCTGCTAATGAGG 81314 Query 212228 GTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGCTGCACATGGATACTTCG 212287 ||||||| || || |||||||||||||| |||||||| || ||||| || || || || | Sbjct 81313 GTTACAAATTTGGTCAAGAAGAAGAGACTTATAACATTGTGGCTGCTCACGGTTATTTTG 81254 Query 212288 GTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGAAGTTTACACTTCTTCCTCG 212347 || || | |||||||| ||||| ||||||||| | ||||||||||||| | | Sbjct 81253 GTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTGG 81194 Query 212348 CATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTCA 212407 | | |||||||| | | | ||||| || || | ||||| | || |||||||||| Sbjct 81193 CTGCTTGGCCTGTAGTAGGGATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCATTCA 81134 Query 212408 ACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCATCAGGTAAGGTTGTTCCTA 212467 |||||||||||||||| ||||||||||| || |||||| |||| ||| || || Sbjct 81133 ACCTAAATGGATTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGCGTTATTAATA 81074 Query 212468 CTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTTATGCACGAAAGAAATG 212527 |||||| |||| | | ||| | || || |||||||||||||| ||||||||| | |||| Sbjct 81073 CTTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATG 81014 Query 212528 CACACAACTTCCCACTTGACTTAGC 212552 | ||||||||||| || ||| |||| Sbjct 81013 CTCACAACTTCCCTCTAGACCTAGC 80989 >seq7 Length=35964315 Score = 269 bits (298), Expect = 4e-67 Identities = 338/460 (73%), Gaps = 4/460 (1%) Strand=Plus/Plus Query 212095 ATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTATTC 212154 ||| ||||||| ||||| || ||| |||||| || ||| | ||||| || | ||||| Sbjct 24459257 ATCATTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTC 24459316 Query 212155 TCTGCTATGCACGGTTCTCTTGTTACATCTTCACTT--ATCCGTGAAACCACTGGTTTAG 212212 ||||||||| ||||| |||| || | || | || ||| | |||||||||| | Sbjct 24459317 AGTGCTATGCATGGTTC-CTTGGTA-ACCTATAGTTTGATCAGGGAAACCACTGAAAATG 24459374 Query 212213 ATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGCTG 212272 | || || | |||||||| || || |||||||||| || |||||||| || |||| Sbjct 24459375 AGTCTGCTAATGAGGGTTACAAATTTGGTCAAGAAGAAGGGATTTATAACATTGTGGCTG 24459434 Query 212273 CACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGAAGTT 212332 | ||||| || || ||| || | |||||||| ||||| ||||||||| | || Sbjct 24459435 CTCATGGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTTGTTCTT 24459494 Query 212333 TACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTATCT 212392 ||||||||||| | || | |||||||| | | | ||||| || || | ||||| Sbjct 24459495 TACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATCTGGTTCACTGCTTTAGGTATTA 24459554 Query 212393 GCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCATCAG 212452 | || |||||||||||||||||||| ||||| ||||||||||| || |||||| || Sbjct 24459555 GTACTATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAG 24459614 Query 212453 GTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTTA 212512 || ||| || |||||||| |||| | ||| | || || |||||||||||||| | Sbjct 24459615 GTCGCGTTATTAATACTTGGGCTGATATCACCAACCGTGCTAATCTTGGTATGGAAGTAA 24459674 Query 212513 TGCACGAAAGAAATGCACACAACTTCCCACTTGACTTAGC 212552 |||||||| | ||||| ||||||||||| || ||| |||| Sbjct 24459675 TGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 24459714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807551798173720