Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq4 95.1 3e-14 seq5 93.3 1e-13 seq7 89.7 1e-12 >seq4 Length=40407879 Score = 95.1 bits (104), Expect = 3e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 ||||| || || ||| ||||| || | || || || ||| | |||||| | ||| | Sbjct 4344432 ATGAAAGATGACAGCATTGAGGGAATTTACGATACTCTGAAGGAATGTGCTGTCATTAGC 4344491 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACAT 363740 || || || ||||||||||| || | |||||| ||||||| || | | |||||||| Sbjct 4344492 AAATCAGCTGGAGGAATTGGTGTCTCAGTTCACAATATTCGTGCTACTGGA-AGTTACAT 4344550 Query 363741 TCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATAC 363800 ||| || ||| ||| || ||||| | ||||| ||| | ||||| || || |||| Sbjct 4344551 TCGAGGAACAAATGGAACGTCTAATGGAATTGTTCCTATGTTACGTGTATTCAACGATAC 4344610 Query 363801 TGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839 ||| | || || || || ||||| || || | ||||| Sbjct 4344611 TGCTCGTTATGTTGATCAAGGTGGCGGCAAAAGAAAAGG 4344649 >seq5 Length=47252588 Score = 93.3 bits (102), Expect = 1e-13 Identities = 155/220 (70%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 ||||| || || ||| ||||| |||| ||| || || ||| | |||||| | || | Sbjct 27674832 ATGAAAGATGACAGCATTGAGGGAATCTATGAAACTCTGAAGGAATGTGCTGTCATAAGC 27674773 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACAT 363740 || || || ||||||||||| ||| | |||||| ||||||| || | |||||||| Sbjct 27674772 AAATCAGCTGGAGGAATTGGTGTCTCGGTTCACAATATTCGTGCTACTGGT-AGTTACAT 27674714 Query 363741 TCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATAC 363800 ||| || ||| ||| |||||||| | ||||| ||| | || || || | |||| Sbjct 27674713 TCGAGGAACAAATGGAACATCGAATGGAATTGTTCCTATGTTACGCGTCTTCAATGATAC 27674654 Query 363801 TGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGG 363840 ||| | || || || || ||||| || || | |||||| Sbjct 27674653 TGCTCGTTATGTTGATCAAGGTGGCGGCAAAAG-AAAGGG 27674615 >seq7 Length=35964315 Score = 89.7 bits (98), Expect = 1e-12 Identities = 157/221 (71%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACT-TAAGAATTGTGCTCTTATTTC 363680 ||||| || ||| || ||||| || | ||| || || | ||||| ||||| | || Sbjct 14545836 ATGAAAGATGATAGTATTGAGGGAATTTATGATACTCTCTCAGAAT-GTGCTATGATAAG 14545894 Query 363681 CAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACA 363739 ||| || || ||||||||||| || || |||||| |||| || || | || |||| Sbjct 14545895 CAAATGCGCTGGAGGAATTGGTGTCTCAATTCACAATATTCGAGCTACTG-GGAGCTACA 14545953 Query 363740 TTCGCGGCACAGGGGGATAC-TCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAAT 363798 |||| || ||| || ||| || ||||| | ||||| ||||| ||||| || | || Sbjct 14545954 TTCGAGGAACAAATGG-TACTTCTAATGGAATTGTTCCTATGCTACGTGTTTTCAATGAT 14546012 Query 363799 ACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839 ||||| | || || || || |||||||| ||| | ||||| Sbjct 14546013 ACTGCATGTTATGTTGATCAAGGTGGAGGCAAGAGAAAAGG 14546053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303347972363534