Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq7 87.8 2e-12 >seq7 Length=35964315 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/227 (70%), Gaps = 8/227 (4%) Strand=Plus/Minus Query 63226 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63285 ||| || ||||| | || | || || | ||| |||| | | ||| |||| ||| || Sbjct 14546039 TCCACCTTGATCAACATAACATGCAGTATCATTGAAAACACGTAGCATAGGAACAATTCC 14545980 Query 63286 ATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63345 ||| || |||||||| || ||| || ||||| ||| | || |||||||| |||||| Sbjct 14545979 ATTAGAAGTACCATTTGTTCCTCGAATGTAGCTCCCAGTAGCTCGAATATTGTGAATTGA 14545920 Query 63346 TAGACCTATTCCCCCTGC-CATTTTAGAGATTA--AT-GCGCATCGTTTTAACGTATCAT 63401 | ||| ||||| || || ||||| | ||| || || ||| | | ||||||| Sbjct 14545919 GACACCAATTCCTCCAGCGCATTT----GCTTATCATAGCACATTCTGAGAGAGTATCAT 14545864 Query 63402 AGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 63448 | || ||||| ||||||||||| ||||| | || || |||||| Sbjct 14545863 AAATTCCCTCAATACTATCATCTTTCATGCAGATAAGGAAGCAGCTA 14545817 Score = 82.4 bits (90), Expect = 1e-10 Identities = 158/228 (69%), Gaps = 10/228 (4%) Strand=Plus/Plus Query 63226 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63285 ||| || ||||| | || | || || | ||| |||| | | ||| |||| ||| || Sbjct 3450176 TCCACCTTGATCAACATAACAGGCAGTATCATTGAAAACACGTAGCATAGGAACAATTCC 3450235 Query 63286 ATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63345 ||| || |||||||| || ||| || ||||| ||| | || ||||| || |||||| Sbjct 3450236 ATTAGAAGTACCATTTGTTCCTCGAATGTAGCTCCCAGTAGCTCGAATGTTGGGAATTGA 3450295 Query 63346 TAGACCTATTCCCCCTGC-CATTTTAGAGATTAATGC-GCATCGTTTTAAC---GTATCA 63400 | ||| ||||| || || ||||| | ||| || ||| | || | | |||||| Sbjct 3450296 GACACCAATTCCTCCAGCGCATTT----GCTTATCGCAGCA-CATTCTGAGAGAGTATCA 3450350 Query 63401 TAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 63448 || || ||||| ||||||||||| ||||| | || || |||||| Sbjct 3450351 TAAATTCCCTCAATACTATCATCTTTCATGCAGATAAGGAAGCAGCTA 3450398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633629330825200