Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq1 91.5 2e-13 seq9 89.7 6e-13 seq3 87.8 2e-12 seq8 86.0 7e-12 seq7 86.0 7e-12 seq4 86.0 7e-12 >seq1 Length=42145699 Score = 91.5 bits (100), Expect = 2e-13 Identities = 76/92 (83%), Gaps = 2/92 (2%) Strand=Plus/Minus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGC 126322 |||| ||| |||||||||||||||||||||||||||||| | |||||| || | || Sbjct 26145057 ACAGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGC 26145000 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||||| || |||||| ||| ||||| ||| Sbjct 26144999 GTGGGTTCAAATCCCACAGCTGTCAAATAATT 26144968 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/85 (84%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 41633735 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 41633676 Query 126324 TGGGTTCGAACCCCACACCTGACAA 126348 ||||||| || ||||| ||||||| Sbjct 41633675 TGGGTTCAAATCCCACTTCTGACAA 41633651 >seq9 Length=58970307 Score = 89.7 bits (98), Expect = 6e-13 Identities = 78/95 (82%), Gaps = 4/95 (4%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 2143462 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 2143403 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||| || ||||| ||||| |||||| || Sbjct 2143402 GTGGGTTCAAATCCCACTTCTGAC--ATTATTTTT 2143370 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/85 (84%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 19125229 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 19125288 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 |||||||| || ||||| |||||| Sbjct 19125289 GTGGGTTCAAATCCCACTTCTGACA 19125313 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/84 (83%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 55834983 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 55834924 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 ||||||| || ||||| |||||| Sbjct 55834923 TGGGTTCAAATCCCACTTCTGACA 55834900 >seq3 Length=50651951 Score = 87.8 bits (96), Expect = 2e-12 Identities = 76/92 (83%), Gaps = 3/92 (3%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 18585326 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 18585269 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATTAT 126356 |||||| || |||||| ||| |||||| |||| Sbjct 18585268 GGGTTCAAATCCCACAGCTGTCAAATT-TTAT 18585238 >seq8 Length=40689132 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/84 (83%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 649566 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 649507 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 ||||||| || ||||| |||||| Sbjct 649506 TGGGTTCAAATCCCACTTCTGACA 649483 >seq7 Length=35964315 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/84 (83%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 34281893 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 34281952 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 ||||||| || ||||| |||||| Sbjct 34281953 TGGGTTCAAATCCCACTTCTGACA 34281976 Score = 82.4 bits (90), Expect = 9e-11 Identities = 85/109 (78%), Gaps = 3/109 (3%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 19551113 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 19551056 Query 126328 TTCGAACCCCACACCTGACAA-ATTATTATTGGAATTTTTGTTGCGGTT 126375 ||| || |||||| ||| ||| || || || |||||||| || || Sbjct 19551055 TTCAAATCCCACATCTGTCAACGTTTTTTTTTCCTTTTTTGTTTCGTTT 19551007 >seq4 Length=40407879 Score = 86.0 bits (94), Expect = 7e-12 Identities = 74/91 (81%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 34240829 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 34240888 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTAT 126353 |||||||| || ||||| ||||| |||| Sbjct 34240889 GTGGGTTCAAATCCCACTTTTGACATGTTAT 34240919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556858454223880