Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq4 140 7e-28 seq7 120 6e-22 seq5 93.3 9e-14 seq3 93.3 9e-14 seq2 93.3 9e-14 seq9 91.5 3e-13 seq8 87.8 4e-12 seq6 87.8 4e-12 >seq4 Length=40407879 Score = 140 bits (154), Expect = 7e-28 Identities = 534/823 (65%), Gaps = 28/823 (3%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||||| ||| ||||| |||||||| |||| |||||||| | | Sbjct 10865821 TCGAAGAAGTTTGTCTTGCCCTGCAGCGAGATGAGCTCCATCCAGTCAAAGGGGTTGGCG 10865880 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || |||||| ||| || || || | || | ||||||||| || ||||| | Sbjct 10865881 GCGTTGTACATCTTCTTGCACCCGAGAGCCATGAGCAGGCGGTCTGCGACGAACTCGATG 10865940 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATA-CGACAAGGAATTGCCTCACAGAT 251741 ||||| | ||| || | ||||||||| | | |||| ||| || || |||| Sbjct 10865941 TACTGGCTCATTAGCGCGCCGTTCATGCCGACGAGCGCGACGGGGAGC-GCGTCGCAGAC 10865999 Query 251742 GAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAG 251801 || || ||| || | || || || | || || | || | | | || Sbjct 10866000 AAACTCTCGCTCGATGTCGACGGCGTCGGCGACGATCTCGCGGACGCGGGGCTCGTCGAG 10866059 Query 251802 CTTGTTCTCCAGCTTTGAGTACAGGAG-CTCGCCAAACTGTTG--GTGCAGACCCTCGTC 251858 |||| | || ||| ||||| | ||| || || | |||||| |||||||| Sbjct 10866060 CTTGCTGCGGAGGAGGTCGTAGAGGAGGCACGCGAA---GTCGCAGTGCAGGCCCTCGTC 10866116 Query 251859 GCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCA 251918 ||| ||||| ||||||||| | ||||| ||||| | ||| || ||| ||||||| Sbjct 10866117 GCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGCCCCCGCTTCTTGAGCCA 10866176 Query 251919 GAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAG 251978 |||||| ||||| ||||| || ||||| | | |||||||| || | | || || || Sbjct 10866177 GAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATTCCCTCGACGCAGGCGAACGCGACGAG 10866236 Query 251979 GCGCTCAGCAAACGACTTGTCCTGCGACAA--GAACTTCTGTGCCCATGCTGCCTTCTTT 252036 ||||| || || | | || || ||| | | || ||||| | ||||| Sbjct 10866237 TCGCTCGGCGAA-GCGCTCCCCGCCGTCAATCCAGCGCATG-GCCCAGTCGGCCTTGCGG 10866294 Query 252037 CCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTCCTCG 252096 | || ||||||| || ||||| || ||||| || | |||||| |||| | Sbjct 10866295 CGTACGGCGGGGACGGTGTCGATGGCGCGGAAGAGGCGGTCCTTCTCGGCGCCGTCGCGG 10866354 Query 252097 ATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACATCTGG 252156 ||| | || ||||| || |||||||||||||| |||||| ||| || |||||| Sbjct 10866355 ATGTAGGTCTCGAGCAGCAGCGAGTACATCTCCGAGTGGATGTTCTCGATGGCGATCTGG 10866414 Query 252157 TAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTT--CCGT-GGA---AAAGTTGTTT 252210 | | |||| | |||||| | |||| ||| | ||| ||| ||| | Sbjct 10866415 AAGCCGTAGA----AGGCGCGG--GCCTCGGCGACCTGCACGTCGGACATGAAGCGGGAC 10866468 Query 252211 GCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATG 252270 || | |||||| | ||| ||||| ||| | | || |||||| | || | | |||| Sbjct 10866469 GCGAGGTTCTCGAGCACGATGCCGTCGGAGGCGGCGAAGAAGGCGAGCACGTGGGAGATG 10866528 Query 252271 AAGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAGG- 252329 ||||| ||||| ||| | |||| || ||||| | ||| | ||||| Sbjct 10866529 AAGTGGCGCTCGTCGGGGGAGAGCGCCTCGTCCCAGTGGCGCGCGTC--GGCGGAGAGGT 10866586 Query 252330 -AACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTA 252371 || || || |||||||||| | | ||||||||||||||| Sbjct 10866587 CCACCTCCTCGGCCGTCCAGAAGGACGCCACCGCCTTCTTGTA 10866629 >seq7 Length=35964315 Score = 120 bits (132), Expect = 6e-22 Identities = 404/619 (65%), Gaps = 10/619 (2%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||||| ||| ||||| |||||||| ||||||| ||||| | | Sbjct 23911479 TCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCATCCAGTCGAATGGGTTGGCG 23911538 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | |||||| ||| | || || || || | || | |||||| || || ||||| | Sbjct 23911539 ACGTTGTACATCTTCTGGTGCCCCAGCGCCATGAGCAGGCGGTCGGCGACGAACTCGATG 23911598 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATA-CGACAAGGAATTGCCTCACAGAT 251741 ||||| | ||| || | |||||| || | | |||| ||| || || |||| Sbjct 23911599 TACTGGCTCATGAGCCCGCCGTTCATTCCGACGAGCGCGACGGGGAGC-GCGTCGCAGAC 23911657 Query 251742 GAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGAC-A 251800 ||| || ||| || | || || || | || || | || | ||| | | | Sbjct 23911658 GAACTCGCGCTCGATGTCGACGGCGTCGGCGACGATCTCGCGGACGCG-GCCCTCGTCGA 23911716 Query 251801 GCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCGC 251860 ||||| | || ||| ||||| | | || | ||| || |||||||||| Sbjct 23911717 GCTTGCTGCGGAGGAGGTCGTAGAGGAGGCAGGCGAAGTCGCAGTGGAGGCCCTCGTCGC 23911776 Query 251861 GACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGA 251920 | ||||| ||||||||| | ||||| ||||| | || || ||| ||||||||| Sbjct 23911777 GGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGGCCGCGCTTCTTGAGCCAGA 23911836 Query 251921 AGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAGGC 251980 |||| ||||| ||||| || ||||| | | ||||| || || | | || || |||| Sbjct 23911837 AGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCAACGCAGGCGAAGGCGACGAGGC 23911896 Query 251981 GCTCAGCAAACGACTTGTCCTGCGACAA--GAACTTCTGTGCCCATGCTGCCTTCTTTCC 252038 |||| || || | | || || | | | | || ||||| | ||||| | Sbjct 23911897 GCTCGGCGAA-GCGCTCCCCGCCGTCGATCCAGCGCATG-GCCCAGTCGGCCTTGCGGCG 23911954 Query 252039 AACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTCCTCGAT 252098 || ||||||| || ||||| || ||||| || | |||||| |||| ||| Sbjct 23911955 CACGGCGGGGACGGTGTCGATGGCGCGGAAGAGGTGGTCCTTCTCGGCGCCGTCGCGGAT 23912014 Query 252099 GAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACATCTGGTA 252158 | | || || || || |||||||||||||| |||||| ||| || |||||| | Sbjct 23912015 GTAGGTCTCGAGAAGCAGCGAGTACATCTCCGAGTGGATGTTCTCGATGGCGATCTGGAA 23912074 Query 252159 AGCATAGAATAGACGCGCG 252177 | |||| || |||||| Sbjct 23912075 GCCGTAGA--AGGCGCGCG 23912091 >seq5 Length=47252588 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 35642646 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 35642705 Query 142563 CCCCAC 142568 |||||| Sbjct 35642706 CCCCAC 35642711 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 36610807 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 36610866 Query 142563 CCCCAC 142568 |||||| Sbjct 36610867 CCCCAC 36610872 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 35642319 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 35642378 Query 142564 CCCAC 142568 ||||| Sbjct 35642379 CCCAC 35642383 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 46540079 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 46540020 Query 142564 CCCAC 142568 ||||| Sbjct 46540019 CCCAC 46540015 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || |||||||||||||||| Sbjct 41101812 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAA 41101871 Query 142563 CCCCAC 142568 |||||| Sbjct 41101872 CCCCAC 41101877 >seq3 Length=50651951 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 12961727 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 12961786 Query 142563 CCCCAC 142568 |||||| Sbjct 12961787 CCCCAC 12961792 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 17596471 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 17596530 Query 142563 CCCCAC 142568 |||||| Sbjct 17596531 CCCCAC 17596536 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 41127219 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 41127160 Query 142563 CCCCAC 142568 |||||| Sbjct 41127159 CCCCAC 41127154 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 46659090 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 46659031 Query 142563 CCCCAC 142568 |||||| Sbjct 46659030 CCCCAC 46659025 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 12368838 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 12368897 Query 142564 CCCAC 142568 ||||| Sbjct 12368898 CCCAC 12368902 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 25805976 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 25806035 Query 142563 CCCCAC 142568 |||||| Sbjct 25806036 CCCCAC 25806041 >seq2 Length=49199997 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 27801870 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 27801811 Query 142563 CCCCAC 142568 |||||| Sbjct 27801810 CCCCAC 27801805 Score = 93.3 bits (102), Expect = 9e-14 Identities = 68/78 (87%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 28500326 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 28500385 Query 142564 CCCACATCGGGCAGAAGT 142581 ||||| |||| ||||| Sbjct 28500386 CCCACGGTGGGC-GAAGT 28500402 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 28938622 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 28938681 Query 142563 CCCCAC 142568 |||||| Sbjct 28938682 CCCCAC 28938687 >seq9 Length=58970307 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 18060683 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 18060742 Query 142564 CCCAC 142568 ||||| Sbjct 18060743 CCCAC 18060747 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 42816167 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 42816108 Query 142564 CCCAC 142568 ||||| Sbjct 42816107 CCCAC 42816103 >seq8 Length=40689132 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 40358577 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 40358636 Query 142563 CCCCAC 142568 |||||| Sbjct 40358637 CCCCAC 40358642 >seq6 Length=36014550 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 25834320 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 25834379 Query 142563 CCCCAC 142568 |||||| Sbjct 25834380 CCCCAC 25834385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027832361993417