Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq4 82.4 5e-11 >seq4 Length=40407879 Score = 82.4 bits (90), Expect = 5e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | || || ||||| ||||| || || ||| | ||| || || | Sbjct 38277120 ATGCAAATCTTTGTCAAGACCTTAACTGGCAAGACTATCACCCTTGAAGTCGAGTCCTCT 38277179 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | ||| || ||| || || || || | ||| |||| Sbjct 38277180 GACACAATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAAGGCATCCCTCCGGACCAG 38277239 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||| | | |||||||||||||| || || || ||| || |||| ||||||||| Sbjct 38277240 CAGCGGTTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGTACCTTGGCTGATTACAAT 38277299 Query 22014 ATTCAGAAGGAATCTACTCTTCA 22036 |||||||||||||| ||||| || Sbjct 38277300 ATTCAGAAGGAATCCACTCTCCA 38277322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358123329114298