Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq7 347 2e-90 seq4 345 8e-90 >seq7 Length=35964315 Score = 347 bits (384), Expect = 2e-90 Identities = 525/730 (72%), Gaps = 20/730 (3%) Strand=Plus/Minus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || ||||||||||||||||| |||||||| || |||||||| || || | |||||| Sbjct 23912173 CTCGCCTTCTTCGCCGCCTCCGACGGCATCGTGCTCGAGAACCTCTCCTCCCGCTTCATG 23912114 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 || || ||| | ||||||||| |||||||||||||||||| ||||| |||||| Sbjct 23912113 TCCGACGTCCAGGTCGCCGAGGCGCGCGCCTTCTACGGCTTCCAGATCGCCATCGAGAAC 23912054 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGT 42602 | ||||| ||| ||||| | || ||| | || ||||||| || || |||| Sbjct 23912053 ATCCACTCGGAGATGTACTCGCTGCTTCTCGAGACCTACATCCGCGACGGCGCCGAGAAG 23911994 Query 42603 AACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCG 42662 || || ||| ||||| || || | ||| | | ||||| |||||||| Sbjct 23911993 GACCACCTCTTCCGCGCCATCGACACCGTCCCCGCCGTGCGCCGCAAGGCCGACTGGGCC 23911934 Query 42663 CTCAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGC 42721 | ||||||||| | || ||| |||| |||| | || || ||||| || Sbjct 23911933 ATGCGCTGGATCGACGGCGGGGAGCGC----TTCGCCGAGCGCCTCGTCGCCTTCGCCTG 23911878 Query 42722 CGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAA-GG 42780 ||| ||||||||||||||||||||| ||||| | ||||||||||||||||| || || Sbjct 23911877 CGTTGAGGGCATCTTCTTCTCGGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGCGG 23911818 Query 42781 TGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATA 42840 || ||||| || ||||||||||| ||||| |||||| | | |||||||| || || Sbjct 23911817 CCTC-ATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTCCACT 23911759 Query 42841 GGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGA--AGGAGCG 42898 | ||||| ||||||||||| | ||| || |||| | |||| ||||| ||| || Sbjct 23911758 GCGACTTCGCCTGCCTCCTCT--ACGA-CCTCCTCCGCAGCAAG--CTCGACGAGGGCCG 23911704 Query 42899 GGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCT 42958 ||||| | ||| || | || ||||| || |||||| |||||| || | |||| Sbjct 23911703 CGTCCGCGAGATCGTCGCCGACGCCGTCGACATCGAGCGCGAGTTCGTCTGCGACGCGCT 23911644 Query 42959 GCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGC 43018 ||||| | || ||||| |||||| || |||||| || |||||||| ||| |||||| Sbjct 23911643 CCCCGTCGCGCTCGTCGGAATGAACGGCGGGCTCATGAGCCAGTACATCGAGTTCGTCGC 23911584 Query 43019 CGACCATCTCCT-GTGCCAGATGGGTC-TCAGCCGCCTCTACAAC-ACGCCGTGCCCCTT 43075 ||||| || || || | | |||| | ||| | | |||||| |||| ||| || Sbjct 23911583 CGACCGCCTGCTCATGGC-GCTGGGGCACCAGAAG-ATGTACAACGTCGCC-AACCCATT 23911527 Query 43076 CGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGC 43135 ||||| |||||| ||||||| || |||||||||||||||| |||||||||||||||| Sbjct 23911526 CGACTGGATGGAGCTCATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGG 23911467 Query 43136 CGACTACCAG 43145 || |||||| Sbjct 23911466 GGAGTACCAG 23911457 >seq4 Length=40407879 Score = 345 bits (382), Expect = 8e-90 Identities = 589/842 (70%), Gaps = 19/842 (2%) Strand=Plus/Minus Query 42312 TACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGACACG 42371 |||||||||||| | ||| |||||| ||||||||| | ||||| || ||| || Sbjct 10866629 TACAAGAAGGCGGTGGCGTCCTTCTGGACGGCCGAGGAGGTGGACCTCTCCGCCGACGCG 10866570 Query 42372 GCCGGCTGGGA---GTCACTGTCTGAGAACGAAAAGTTTTTCCTCAAAAACATACTGGCC 42428 | |||||| | | || || |||| ||| || || | || ||| Sbjct 10866569 CGCCACTGGGACGAGGCGCTCTCCCCCGACGAGCGCCACTTCATCTCCCACGTGCTCGCC 10866510 Query 42429 TTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAAGAG 42488 |||||||||||||| |||||||| || |||||||| || || | |||||| || Sbjct 10866509 TTCTTCGCCGCCTCCGACGGCATCGTGCTCGAGAACCTCGCGTCCCGCTTCATGTCCGAC 10866450 Query 42489 GTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCAC 42548 |||||| | ||||| ||| |||||||||||||||||| ||||| |||||| | ||| Sbjct 10866449 GTGCAGGTCGCCGAGGCCCGCGCCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCAC 10866390 Query 42549 TCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTAACGGG 42608 || ||| ||||| | |||||| | || ||||||| || || |||| || | Sbjct 10866389 TCGGAGATGTACTCGCTGCTGCTCGAGACCTACATCCGCGACGGCGCCGAGAAGGACCGC 10866330 Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAG-AAGGCGGACTGGGCGCTCAA 42667 || ||| ||||| || || | ||| | | | | | ||||| |||||||| | Sbjct 10866329 CTCTTCCGCGCCATCGACACCGTCCCCGCCGT-ACGCCGCAAGGCCGACTGGGCCATGCG 10866271 Query 42668 CTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCG 42726 |||||| || | || ||| |||| |||| | || || || || || ||||| Sbjct 10866270 CTGGATTGACGGCGGGGAGCGC----TTCGCCGAGCGACTCGTCGCGTTCGCCTGCGTCG 10866215 Query 42727 AGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGA 42786 |||| ||||||||||||||| ||||| | ||||||||||||||||| || || | | Sbjct 10866214 AGGGAATCTTCTTCTCGGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGGGGGCTCA 10866155 Query 42787 TGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACT 42846 |||| || ||||||||||| ||||| |||||| | | |||||||| ||||| | |||| Sbjct 10866154 TGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTGCACTGCGACT 10866095 Query 42847 TTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGA--AGGAGCGGGTCCG 42904 | || |||||||| | ||| || |||| | |||| ||||| || || ||||| Sbjct 10866094 TCGCGTGCCTCCTCT--ACGA-CCTCCTCCGCAGCAAG--CTCGACGAGCCCCGCGTCCG 10866040 Query 42905 GGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGT 42964 | ||| || | || ||||| || |||||| ||||| || | |||| ||||| Sbjct 10866039 CGAGATCGTCGCCGACGCCGTCGACATCGAGCGAGAGTTTGTCTGCGACGCGCTCCCCGT 10865980 Query 42965 GTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCA 43024 | || |||||||||||| || || ||| || |||||||| ||| |||||| |||| Sbjct 10865979 CGCGCTCGTCGGCATGAACGGCGCGCTAATGAGCCAGTACATCGAGTTCGTCGCAGACCG 10865920 Query 43025 TCTCCT-GTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTA 43083 || || || | |||| || | | |||||| | | |||||| |||| | Sbjct 10865919 CCTGCTCATGGCTCTCGGGTGCAAGAAG-ATGTACAACGCCGCCAACCCCTTTGACTGGA 10865861 Query 43084 TGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACC 43143 ||||| ||||||| || |||||||||| ||||| |||||||||||||||| |||||||| Sbjct 10865860 TGGAGCTCATCTCGCTGCAGGGCAAGACAAACTTCTTCGAGAAGCGCGTCGGCGACTACC 10865801 Query 43144 AG 43145 || Sbjct 10865800 AG 10865799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944335221971120