Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq7 141 2e-28 seq4 136 9e-27 >seq7 Length=35964315 Score = 141 bits (156), Expect = 2e-28 Identities = 303/450 (67%), Gaps = 2/450 (0%) Strand=Plus/Minus Query 243289 TTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 243348 || || ||||| |||||||||| | |||||||| || || | || || || ||| Sbjct 23911906 TTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTTGAGGGCATCTTCTTCTCGGGCTCCTTC 23911847 Query 243349 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 243408 ||||||||||| ||||| ||| || | ||||| |||||| | || |||||| Sbjct 23911846 TGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGCCTCACCTTCTCCAACGAG 23911787 Query 243409 TTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCTC 243468 ||||| |||||||||||||| ||| | |||| || | || ||| Sbjct 23911786 CTCATCTCCCGCGACGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACGACCTCCTC 23911727 Query 243469 CAGAACAAGCTACCATTCGAAACG-GTCAAACAAATCATCACAGAAGCAGTTGAAAACGA 243527 | | |||||| | | | || ||| | ||| || | || || || || | ||| Sbjct 23911726 CGCAGCAAGCT-CGACGAGGGCCGCGTCCGCGAGATCGTCGCCGACGCCGTCGACATCGA 23911668 Query 243528 AAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCAT 243587 || ||| | |||||||| | || | ||| | || |||||| | ||||| Sbjct 23911667 GCGCGAGTTCGTCTGCGACGCGCTCCCCGTCGCGCTCGTCGGAATGAACGGCGGGCTCAT 23911608 Query 243588 GGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGT 243647 | | ||||||||||| ||||| ||||||||| | |||| ||||| || | |||| | Sbjct 23911607 GAGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCATGGCGCTGGGGCACCAGAAGAT 23911548 Query 243648 GTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAA 243707 ||||||| | ||||| || | || ||||||||||| ||||| || || || || || Sbjct 23911547 GTACAACGTCGCCAACCCATTCGACTGGATGGAGCTCATCTCGCTGCAGGGCAAGACCAA 23911488 Query 243708 CTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 ||||||||| ||||| ||| | || || || Sbjct 23911487 CTTCTTCGAGAAGCGCGTCGGGGAGTACCA 23911458 >seq4 Length=40407879 Score = 136 bits (150), Expect = 9e-27 Identities = 304/451 (67%), Gaps = 4/451 (1%) Strand=Plus/Minus Query 243289 TTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 243348 || || ||||| |||||||| | | ||||| || || || | || || || ||| Sbjct 10866248 TTCGCCGAGCGACTCGTCGCGTTCGCCTGCGTCGAGGGAATCTTCTTCTCGGGCTCCTTC 10866189 Query 243349 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 243408 ||||||||||| ||||| ||| || | ||||| |||||| | || |||||| Sbjct 10866188 TGCGCCATCTTCTGGCTCAAGAAGCGGGGGCTCATGCCGGGCCTCACCTTCTCCAACGAG 10866129 Query 243409 TTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCG-GTGAGCTTATGTATTCAAAGCT 243467 ||||| |||||||||||||| ||| | |||| ||| || | || || Sbjct 10866128 CTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGCGTGC-CTCCTCTACGACCTCCT 10866070 Query 243468 CCAGAACAAGCTACCATTCGAAACG-GTCAAACAAATCATCACAGAAGCAGTTGAAAACG 243526 || | |||||| | | | || ||| | ||| || | || || || || | || Sbjct 10866069 CCGCAGCAAGCT-CGACGAGCCCCGCGTCCGCGAGATCGTCGCCGACGCCGTCGACATCG 10866011 Query 243527 AAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCA 243586 | || || | |||||||| | || | ||| | ||||||||| | || | Sbjct 10866010 AGCGAGAGTTTGTCTGCGACGCGCTCCCCGTCGCGCTCGTCGGCATGAACGGCGCGCTAA 10865951 Query 243587 TGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAG 243646 || | ||||||||||| ||||| || |||||| | |||| || || || | |||| Sbjct 10865950 TGAGCCAGTACATCGAGTTCGTCGCAGACCGCCTGCTCATGGCTCTCGGGTGCAAGAAGA 10865891 Query 243647 TGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTA 243706 |||||||| || |||||||||| || ||||||||||| ||||| || || || || | Sbjct 10865890 TGTACAACGCCGCCAACCCCTTTGACTGGATGGAGCTCATCTCGCTGCAGGGCAAGACAA 10865831 Query 243707 ACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 |||||||||| ||||| ||| | || || || Sbjct 10865830 ACTTCTTCGAGAAGCGCGTCGGCGACTACCA 10865800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102875237970950