Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq4 163 3e-35 seq7 154 2e-32 seq5 87.8 2e-12 >seq4 Length=40407879 Score = 163 bits (180), Expect = 3e-35 Identities = 315/454 (69%), Gaps = 12/454 (3%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 |||||| || || ||||||||||||||||||||||| || | || ||| |||||| Sbjct 10865802 GTAGTCGCCGACGCGCTTCTCGAAGAAGTTTGTCTTGCCCTGCAGCGAGATGAGCTCCAT 10865861 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGT-TGGCACCCCA-ATCTGTTTGAGGAGA 125875 | ||||| ||||| | ||| | || | | |||||| | | | | ||| || Sbjct 10865862 CCAGTCAAAGGGGTTGGCGGCGTTGTACATCTTCTTGCACCCGAGAGCCAT--GAGCAGG 10865919 Query 125876 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG-GTT 125934 || || | |||| |||| ||||||| ||| | | |||||| |||| ||| | Sbjct 10865920 CGGTCTGCGACGAACTCGATGTACTGGCTCATTAGCGCGCCGTTCATGCCGACGAGCGCG 10865979 Query 125935 ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGC 125994 || ||||||||||| ||| ||| | ||| || || ||||| || ||||| | Sbjct 10865980 ACG-GGGAGCGCGTCGCAGACAAACTCTCGCTCGATGTCGACGGCGTCGGCGACGATCTC 10866038 Query 125995 GTGAATGGTGTCCACCCCAGGTCTATTGCGCA--AAGTCTT-GAAGAGTTCCACGGCAAA 126051 | | | | | | | | | | |||| | | ||| | || ||| |||| | || Sbjct 10866039 GCGGACGCGGGGCTCGTCGAGCTTGCTGCGGAGGAGGTCGTAGAGGAGG--CACG-CGAA 10866095 Query 126052 CTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCAT 126111 || ||| || |||||||| ||||||||||| || || |||||| || || ||||| Sbjct 10866096 GTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCAT 10866155 Query 126112 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTC 126171 ||| ||||||||||| | |||||| || || || || || |||||||||||||||||||| Sbjct 10866156 GAGCCCCCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATTCCCTC 10866215 Query 126172 CACACACGCGAACGCAAAGAGACGCTCAGCAAAG 126205 || || |||||||| | ||| ||||| || ||| Sbjct 10866216 GACGCAGGCGAACGCGACGAGTCGCTCGGCGAAG 10866249 Score = 118 bits (130), Expect = 1e-21 Identities = 280/418 (67%), Gaps = 4/418 (1%) Strand=Plus/Plus Query 10775 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 10834 || |||| || |||||||| | ||||| || || || || ||| || | |||| Sbjct 39891012 ACAGTGACCTGCCGATCAAACCTTCCTGGACGCAGAAGCGCAGAGTCCAGCACATCAGGC 39891071 Query 10835 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTC 10894 | ||| ||||| |||| ||| | || || | | | |||||||||||||||||||| Sbjct 39891072 CTGTTGGTCGCAGCGAGGACGATGACACCACTGTTGCCGGCAAAGCCATCCATCTCAGTC 39891131 Query 10895 AAGAGTTGATTGATGGTTTGTTCGCGTTCATCATT-CGCGGGCATACCACCCGCACTGCG 10953 ||||| || || ||||| || || | || || || | | | | || |||| || Sbjct 39891132 AAGAGCTGGTTAATGGTCTGCTCCCTCTCGTCGTTACCACCACCGAGC-CCAGCACCACG 39891190 Query 10954 TTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGC 11013 ||| | |||||||| ||||| ||||||||||| || || || || || | ||| Sbjct 39891191 CTGCCTCCCGACGGCATCAATCTCATCGATGAAGACAATGCAGGGCGCCTTGGCCTTGGC 39891250 Query 11014 AACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATT 11073 || |||| || || || || ||||||||||| || || | || || || | Sbjct 39891251 CTTCTCGAAGAGGTCGCGCACCCTGGATGCACCGACACCGACGAAGAGCTCGACGAACTC 39891310 Query 11074 GGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAG 11133 || |||| || || ||| || ||| | || || |||| ||| || || ||||| Sbjct 39891311 GGACGCGGCGCAGGAGAAGAAAGGCACGCCAGCCTCTCCGGCGACGGCACGCGCCAGGAG 39891370 Query 11134 GGTCTTCCCCGTCCCAGGTTTCCCTGCGAGAAGGGCACCACGT-GGGATCCTGGCACC 11190 ||| || || |||||||| || |||| | | || | | | |||||| ||||||| Sbjct 39891371 GGTTTTACCTGTCCCAGGCGGACCGACGAGGA-GACATCCCTTGGGGATCTTGGCACC 39891427 Score = 113 bits (124), Expect = 5e-20 Identities = 358/547 (65%), Gaps = 10/547 (2%) Strand=Plus/Plus Query 10610 CGGACAGCGCGGATGGCACACTCATTGAGGAGGTTCGCCAAGTCGGCACCAGAGAAGCCC 10669 ||| | ||| ||||||| ||| || | |||||| || | |||||| || ||| || Sbjct 8634770 CGGCCGGCGAGGATGGCGGCCTCGTTCATGAGGTTGGCGAGGTCGGCGCCGCTGAACCCG 8634829 Query 10670 GTCGTTTGCTTTGCGATGGCGTGTAGCTTCACATCGTCAGCCAACTTCTTGTCTCTGGCG 10729 | || || | || | || ||| ||| || ||| |||||||| ||| | Sbjct 8634830 GGGGTGCGCATGGCCACCACGCTGAGCGACACGTCCGGGTCCAGCTTCTTGT---TGGAG 8634886 Query 10730 -TGGACACCCAAA--ATCTTCTCGCGACCGCGCACACTGGGTAGGGACACGGTGATCTTA 10786 || ||||| | |||| ||| || |||||||| ||| || ||| ||| || Sbjct 8634887 CTGTGCACCCTGAGGATCTCCTCCCGGCCGCGCACGTCGGGGAGCCCGACGCTGACCTGG 8634946 Query 10787 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 10846 || || ||||| || |||||||| || ||| | || ||||| || ||||| || || Sbjct 8634947 CGGTCGAAGCGGCCGGGGCGGAGCAGCGCGGCATCGAGGATCTCCGGCCGGTTGGTGGCG 8635006 Query 10847 GCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTG 10906 ||||| || | || ||| | ||| | || || |||||||| |||| || || || Sbjct 8635007 GCGATCACGATGACGCCGCTGTCGCCGGCGAACCCGTCCATCTCCGTCAGCAGCTGGTTC 8635066 Query 10907 ATGGTTTGTTCGCGTTCATCATTCGCGG-GCATACCACCCGCACTGCGTTGCTTACCGAC 10965 | || || || | ||||| ||| || || | |||| | ||| || ||||| Sbjct 8635067 AGCGTCTGCTCCCTCTCATCGTTCCCGCCGCCGATG-CCCGTCCCGCGCTGGCGGCCGAC 8635125 Query 10966 GGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAGAT 11025 |||||| | || |||||||| |||| ||||| || || ||| | |||| Sbjct 8635126 GGCGTCGACCTCGTCGATGAAGACGAGGCACGGCGCGTTCTCCTTGGCCTTGTTGAAGAG 8635185 Query 11026 ATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGCGGCGGAACA 11085 || || || | | || || || || || ||||| || | || | || | |||| || Sbjct 8635186 GTCCCGCACCCGCGACGCGCCCACGCCGACGAACATCTCGATGAACTCGGAGCCGGA-CA 8635244 Query 11086 TTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCG 11144 | || |||||| ||| || || ||||||||||| || || || |||||||||| Sbjct 8635245 GCGAGAAGAAGGGCACGCCGGCCTCCCCCGCGATGGCCTTCGCCAGCAGCGTCTTCCCCG 8635304 Query 11145 TCCCAGG 11151 |||| || Sbjct 8635305 TCCCCGG 8635311 Score = 105 bits (116), Expect = 8e-18 Identities = 195/281 (69%), Gaps = 4/281 (1%) Strand=Plus/Minus Query 10874 TCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCG 10933 ||||| ||||||||||||||||| ||||| |||| ||||| || | ||||||||| | Sbjct 38499682 TCAAAACCATCCATCTCAGTCAACAGTTGGTTGAGAGTTTGCTCCCTTTCATCATTTCCA 38499623 Query 10934 GGCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATA 10993 | ||| | || | |||| ||||||| || ||||||||||| | || || || Sbjct 38499622 CCACCAATACCTGTACCTCTTTGCCTACCGACAGCATCAATTTCATCAACAAACACTATG 38499563 Query 10994 CACGGTTGATT-TTCACGGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACC 11052 || || ||| | | || | ||| ||| | ||| || ||||| ||||| ||||| Sbjct 38499562 CAAGGAGCATTCTCCTTGGCCTTCTTGAAA-AGATCACGAACTCTGGAAGCACCAACACC 38499504 Query 11053 CACAAACATTTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCAC 11111 |||||||| |||||||| | | | | ||| |||| || || || || | || | Sbjct 38499503 AACAAACATCTCCACAAACTCAGAGCCTGAA-ATTGAGAAAAATGGCACACCAGCCTCTC 38499445 Query 11112 CCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGGT 11152 ||||||| || ||| || | || || || || |||||| Sbjct 38499444 CCGCGATTGCCTTGGCAAGCAAAGTTTTACCAGTTCCAGGT 38499404 Score = 93.3 bits (102), Expect = 5e-14 Identities = 234/352 (66%), Gaps = 8/352 (2%) Strand=Plus/Plus Query 8580 GAGGAGACACCCTTCTATCCACGATCCGTCTATGGCGTCTCAAAGGTTGCGGCACATTGG 8639 ||||| || || || | || || ||| ||| | || | | ||||| || || || ||| Sbjct 1776975 GAGGACACGCCGTTTCACCCCCGCTCCCCCTACGCCGCCGCCAAGGTCGCCGCGCACTGG 1777034 Query 8640 CTCGTGAAGAATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCCGGTATTCTCTTCAAC 8699 | || ||||| || |||| || ||||| || ||| ||| | ||||||||| Sbjct 1777035 TACACCGTCAACTACCGCGAGGCCTACGGGCTCTTCGCCTGCAACGGCGTGCTCTTCAAC 1777094 Query 8700 CACGAGTCACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCACCGATGGTATCAAA 8759 |||||||| || || || || | | ||||| || |||||||| | || Sbjct 1777095 CACGAGTCCCCACGCCGCGGGGAGAACTTCGTCACGCGCAAGATCACGCGCGCCGTCGGC 1777154 Query 8760 CAAATC---GTCGCGGGTG-AGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAG 8815 | ||| |||| | || ||| || || | | || ||||||| ||||| || Sbjct 1777155 CGCATCAAGGTCG-GCCTGCAGACCAAGGTCTTCC---TCGGCAACCTCACCGCCGCCAG 1777210 Query 8816 GGACTGGGGACACGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTTCAACAAGAAGA 8875 |||||||||| |||| |||||| || || || ||||||||| | || || || || | Sbjct 1777211 GGACTGGGGATTCGCCGGGGACTACGTCGAGGCAATGTGGCTCATGCTGCAGCAGGATCA 1777270 Query 8876 GGCGGACGAATATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTTC 8927 | | | || || |||||||| || | |||| | ||| |||| ||||||| Sbjct 1777271 GCCCGGTGATTACGTCGTCGCCACCGAGGAGTCCCACACCGTGGAGGAGTTC 1777322 >seq7 Length=35964315 Score = 154 bits (170), Expect = 2e-32 Identities = 312/453 (69%), Gaps = 10/453 (2%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 ||| ||||| || ||||||||||||||||| ||||| || | || ||| |||||| Sbjct 23911460 GTACTCCCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCAT 23911519 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGT-TGGCACCCCAATCTGTTTGAGGAGAC 125876 | || |||||||| ||| | || | ||| ||||| | |||| || | Sbjct 23911520 CCAGTCGAATGGGTTGGCGACGTTGTACATCTTCTGGTGCCCCAG-CGCCATGAGCAGGC 23911578 Query 125877 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG-GTTA 125935 | || | |||| |||| ||||||| ||| | | |||||| |||| ||| | | Sbjct 23911579 GGTCGGCGACGAACTCGATGTACTGGCTCATGAGCCCGCCGTTCATTCCGACGAGCGCGA 23911638 Query 125936 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCG 125995 | ||||||||||| ||| |||| | ||| || || ||||| || ||||| || Sbjct 23911639 CG-GGGAGCGCGTCGCAGACGAACTCGCGCTCGATGTCGACGGCGTCGGCGACGATCTCG 23911697 Query 125996 TGAATGGTGTCCACCCCAGGTCTATTGCGCA--AAGTCTT-GAAGAGTTCCACGGCAAAC 126052 | | | | || | | | | |||| | | ||| | || ||| || ||| || Sbjct 23911698 CGGACGCGGCCCTCGTCGAGCTTGCTGCGGAGGAGGTCGTAGAGGAGG--CA-GGCGAAG 23911754 Query 126053 TCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATG 126112 || |||||| |||||||| ||||||||||| || || |||||| || || |||||| Sbjct 23911755 TCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATG 23911814 Query 126113 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCC 126172 || || |||||||| | |||||| || || || || || |||||||||||||| ||||| Sbjct 23911815 AGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCA 23911874 Query 126173 ACACACGCGAACGCAAAGAGACGCTCAGCAAAG 126205 || || ||||| || | ||| ||||| || ||| Sbjct 23911875 ACGCAGGCGAAGGCGACGAGGCGCTCGGCGAAG 23911907 >seq5 Length=47252588 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 115174 TTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTG 115233 ||| ||||||||||| ||||| ||||| || ||||||| || || | ||| | || Sbjct 27674939 TTGGGGCCTTGGTGTGCCAGCATTGAAAAGCGTTGGTGAAGCATGTGTAAACCAGCGCTG 27674998 Query 115234 GGACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGA 115293 ||||| || ||| |||| | | | | |||||||||| ||| | || | ||| Sbjct 27674999 AGACATGAGATGGTAAGTCTTGATGGCAGACTCAATGTCTTCCTTGTGTACCCCCACCGA 27675058 Query 115294 GACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTA 115353 |||| ||| | ||||| || || |||| | | | || | ||| || |||||| Sbjct 27675059 AACCCTCATTAGCATGTGCTGTGGCCTTTCAACAACCTTCCCGCCAAGCTTCAAGAGGTA 27675118 Query 115354 ACTCTTCTCCAAGGTCTTGAGACCAAAATAACCAAAGTCATAGTCCCT 115401 | | |||||| ||||||| |||||| || | ||||| ||||||| Sbjct 27675119 AGACCTCTCCAGAGTCTTGAAACCAAAGTAGTCGTAGTCAAAGTCCCT 27675166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597351083647960