Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq4 98.7 9e-16 seq5 96.9 3e-15 seq2 96.9 3e-15 seq1 82.4 7e-11 >seq4 Length=40407879 Score = 98.7 bits (108), Expect = 9e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || |||||||| | | ||| | || || || || ||||| || || ||||| ||| Sbjct 38277577 ATGCCACCGCGGAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTATAGTCG 38277518 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || ||| |||| || ||||| ||| | || | || |||||||| || Sbjct 38277517 GCAAGAGTCCGGCCATCCTCCAGCTGCTTTCCAGCGAAGATGAGGCGCTGCTGGTCTGGT 38277458 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||||||||| ||||||||||| ||| || | || | || | |||||||||||||| Sbjct 38277457 GGAATGCCTTCCTTATCTTGAATCTTTGCCTTCA-CGTTATCAATTGTGTCGGAAGACTC 38277399 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || | || || || || | || || ||||| || ||||| Sbjct 38277398 AACTTCAAGCGTGATGGTCTTTCCAGTCAAGGTCTTCACAAAGATCTGCAT 38277348 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | ||| | | || || || || || |||||||| || ||||| ||||| Sbjct 38277349 ATGCCTCCCCTGAGGCGGAGGACGAGGTGGAGAGTGGATTCCTTCTGAATATTGTAATCA 38277290 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| || | || || || || | ||||| || ||||||||||| Sbjct 38277289 GCCAAGGTACGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAACCGCTGCTGGTCCGGA 38277230 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || |||||||| || || ||||| || |||| || | ||||| || |||||| Sbjct 38277229 GGGATGCCTTCCTTGTCCTGAATCTTCGCCTTGACATTGTCGATTGTGTCAGAGGACTCG 38277170 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || | || ||||| |||| || || ||||| |||||||| Sbjct 38277169 ACTTCAAGGGTGATAGTCTTGCCAGTTAAGGTCTTGACAAAGATTTGCAT 38277120 Score = 86.0 bits (94), Expect = 6e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| || || || || || |||||||||||||| || ||| | ||| ||| || Sbjct 37851611 CACAAGGTGAAGGGTCGACTCCTTTTGGATATTGTAGTCGGCAAGGGTACGGCCATCCTC 37851670 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 | || || || ||| | || | || ||||||||||| |||||||| || || || || Sbjct 37851671 AAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTG 37851730 Query 45251 AATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 || || || | || | || | |||||| |||||||| || || | || | || | Sbjct 37851731 GATCTTGGCCTTCA-CGTTGTCGATGGTGTCAGAAGACTCCACCTCCAAGGTGATGGTCT 37851789 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||| || ||||| || ||||| || ||||| Sbjct 37851790 TGCCAGTAAGAGTCTTGACAAAGATCTGCAT 37851820 >seq5 Length=47252588 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | |||||| | ||| | || || || || ||||| ||||| || || || Sbjct 6910261 ATGCCTCCCCTGAGCCTGAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCA 6910202 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| ||| || | || ||||| || | || | | ||||||||||| Sbjct 6910201 GCGAGGGTGCGGCCATCCTCGAGCTGCTTTCCAGCAAAGATGAGCCTCTGCTGGTCCGGG 6910142 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || |||||||| || || || || || |||| || | || | |||||| || ||||| Sbjct 6910141 GGGATGCCTTCCTTGTCCTGGATCTTAGCCTTGA-CGTTGTCAATGGTGTCCGAGGACTC 6910083 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||| ||||| || | || |||||||| || || || ||||| || |||||| Sbjct 6910082 GACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCATC 6910031 >seq2 Length=49199997 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | |||||| | ||| || || || || || ||||| ||||| || || || Sbjct 10739621 ATGCCTCCCCTGAGCCTGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCC 10739562 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || || ||| || | || ||||| || | || | | ||||||||||| Sbjct 10739561 GCGAGAGTGCGGCCATCCTCGAGCTGCTTTCCAGCAAAGATGAGCCTCTGCTGGTCCGGG 10739502 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||||||||| || || || || || |||| || | || | |||||| || ||||| Sbjct 10739501 GGAATGCCTTCCTTGTCCTGGATCTTAGCCTTGA-CGTTGTCAATGGTGTCCGAGGACTC 10739443 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || ||||| || | || |||||||| || || || ||||| || |||||| Sbjct 10739442 AACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTAACAAAGATCTGCATC 10739391 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || | |||||| | ||| || || || || || ||||| ||||| || || || Sbjct 10740077 ATTCCACCCCTGAGCCTGAGCACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCA 10740018 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| |||| || || || ||| | |||| || ||||||||||| Sbjct 10740017 GCAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGG 10739958 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 |||||||| || || || || || || || | || | ||||| || |||||| Sbjct 10739957 GGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTGGTCGATCGTGTCCGAGGACTCG 10739898 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| | || |||||||| || || || || || || ||||| Sbjct 10739897 ACCTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 10739848 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| || || || || || ||||||||||| || ||||| | ||| ||| || Sbjct 10740285 CACCAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGCAAGGGTGCGGCCATCCTC 10740226 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 | || || || ||| | |||| || ||||||||||| |||||||| || || || || Sbjct 10740225 GAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTG 10740166 Query 45251 AATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 || || || | || | || | ||||| || |||||||| || ||||| | || | Sbjct 10740165 GATCTTGGCCTTCA-CGTTGTCGATCGTGTCTGAGGACTCGACCTCAAGAGTGATGGTCT 10740107 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||||| || || || ||||| || ||||| Sbjct 10740106 TGCCGGTGAGGGTCTTGACAAAGATCTGCAT 10740076 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || | |||||| | ||| || || || || || ||||| ||||| || || || Sbjct 10739849 ATTCCACCCCTGAGCCTGAGCACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCA 10739790 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| |||| || || || ||| | |||| || ||||||||||| Sbjct 10739789 GCAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGG 10739730 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || ||||| || || || || || || || | || | || | ||| || |||||||| Sbjct 10739729 GGGATGCCCTCCTTGTCCTGGATCTTAGCCTTCA-CGTTGTCGATGGTATCAGAAGACTC 10739671 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| || || || | || ||||| || || || || || || || ||||| Sbjct 10739670 GACCTCAAGCGTGATGGTCTTGCCAGTAAGGGTCTTGACGAAGATCTGCAT 10739620 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || |||||||| | || ||| || |||||||| || ||||| ||||| || |||||| | Sbjct 39557180 CCGCCGCGGAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGCG 39557239 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| || || | || || || ||| | || | || |||||||||||||| Sbjct 39557240 AGGGTGCGGCCGTCCTCGAGCTGCTTCCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGG 39557299 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 || || || || || || || || |||| || | || | ||||||| ||| || Sbjct 39557300 ATACCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCGCTGCTCTCCAC 39557358 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||||| || | ||| || || || || || || || || || |||||| Sbjct 39557359 CTCGAGGGTGATCGTCTTCCCCGTCAGCGTCTTCACGAAGATCTGCATC 39557407 >seq1 Length=42145699 Score = 82.4 bits (90), Expect = 7e-11 Identities = 96/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 45216 CGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTAC 45274 || ||||| ||||| ||||||||||| || || || || || |||| || | || | Sbjct 7134163 CGCTGCTGATCCGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCAAT 7134105 Query 45275 GGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAAT 45334 |||||| |||||||| || ||||| || | || |||||||| || || || ||||| || Sbjct 7134104 GGTGTCAGAAGACTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGAT 7134045 Query 45335 TTGCATC 45341 |||||| Sbjct 7134044 CTGCATC 7134038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452001295936520