Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq4 158 1e-33 seq7 150 2e-31 seq5 96.9 4e-15 >seq4 Length=40407879 Score = 158 bits (174), Expect = 1e-33 Identities = 314/454 (69%), Gaps = 12/454 (3%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| ||||| ||||||||||||||||||||||| || | || ||| |||||| Sbjct 10865802 GTAGTCGCCGACGCGCTTCTCGAAGAAGTTTGTCTTGCCCTGCAGCGAGATGAGCTCCAT 10865861 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGT-TGGCACCCCA-ATCTGTTTGAGGAGA 127348 | ||||| ||||| | ||| | || | | |||||| | | | | ||| || Sbjct 10865862 CCAGTCAAAGGGGTTGGCGGCGTTGTACATCTTCTTGCACCCGAGAGCCAT--GAGCAGG 10865919 Query 127349 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG-GTT 127407 || || | |||| |||| ||||||| ||| | | |||||| |||| ||| | Sbjct 10865920 CGGTCTGCGACGAACTCGATGTACTGGCTCATTAGCGCGCCGTTCATGCCGACGAGCGCG 10865979 Query 127408 ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGC 127467 || ||||||||||| ||| ||| | ||| ||||| || || || ||||| | Sbjct 10865980 ACG-GGGAGCGCGTCGCAGACAAACTCTCGCTCGATGTCGACGGCGTCGGCGACGATCTC 10866038 Query 127468 GTGAATAGTGTCCACCCCAGGTCTATTGCGTA--AAGTCTT-GAAGAGTTCCACAGCAAA 127524 | | | | | | | | | |||| | | ||| | || ||| ||| || || Sbjct 10866039 GCGGACGCGGGGCTCGTCGAGCTTGCTGCGGAGGAGGTCGTAGAGGAGG--CAC-GCGAA 10866095 Query 127525 CTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCAT 127584 || ||| || |||||||| ||||||||||| || || |||||| || || ||||| Sbjct 10866096 GTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCAT 10866155 Query 127585 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTC 127644 ||| ||||||||||| | |||||| || || || || ||||| ||||||||||| ||||| Sbjct 10866156 GAGCCCCCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATTCCCTC 10866215 Query 127645 CACACACGCGAACGCAAATAGACGCTCGGCAAAG 127678 || || |||||||| | || |||||||| ||| Sbjct 10866216 GACGCAGGCGAACGCGACGAGTCGCTCGGCGAAG 10866249 Score = 131 bits (144), Expect = 2e-25 Identities = 365/552 (66%), Gaps = 6/552 (1%) Strand=Plus/Plus Query 12518 GCCGTCGCGGACAGCGCGGATGGCACACTCATTGAGGAGGTTCGCCAAGTCGGCACCAGA 12577 |||| |||| | ||| ||||||| ||| || | |||||| || | |||||| || Sbjct 8634763 GCCGCGGCGGCCGGCGAGGATGGCGGCCTCGTTCATGAGGTTGGCGAGGTCGGCGCCGCT 8634822 Query 12578 GAAGCCCGTCGTTTGCTTTGCGATGGCGTGTAGCTTCACATCGTCAGCCAACTTCTTGTC 12637 ||| || | || || | || | || ||| ||| || ||| |||||||| Sbjct 8634823 GAACCCGGGGGTGCGCATGGCCACCACGCTGAGCGACACGTCCGGGTCCAGCTTCTTGT- 8634881 Query 12638 TCGGGC-GTGGACACCCAAAATCTTCTCGCGTCCGCGCACACTGGGTAGGGACACGGTGA 12696 | | || ||| || | | |||| ||| || |||||||| ||| || ||| ||| Sbjct 8634882 TGGAGCTGTGCACCCTGAGGATCTCCTCCCGGCCGCGCACGTCGGGGAGCCCGACGCTGA 8634941 Query 12697 TCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCG 12756 || || || ||||| || |||||||| || ||| | || ||||| || ||||| | Sbjct 8634942 CCTGGCGGTCGAAGCGGCCGGGGCGGAGCAGCGCGGCATCGAGGATCTCCGGCCGGTTGG 8635001 Query 12757 TCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTT 12816 | || ||||| || | || ||| | ||| |||| || |||||||| |||| || | Sbjct 8635002 TGGCGGCGATCACGATGACGCCGCTGTCGCCGGCGAACCCGTCCATCTCCGTCAGCAGCT 8635061 Query 12817 GATTGATGGTTTGTTCACGTTCATCATTCGCGG-GCATACCACCCGCACTGCGTTGCTTA 12875 | || | || || || | ||||| ||| || || | |||| | ||| || Sbjct 8635062 GGTTCAGCGTCTGCTCCCTCTCATCGTTCCCGCCGCCGATG-CCCGTCCCGCGCTGGCGG 8635120 Query 12876 CCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCA 12935 ||||||||||| | ||||| ||||| |||| ||||| || || ||| | Sbjct 8635121 CCGACGGCGTCGACCTCGTCGATGAAGACGAGGCACGGCGCGTTCTCCTTGGCCTTGTTG 8635180 Query 12936 AAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCG 12995 |||| || ||||| | | || || || || || |||||||| | || | || | || Sbjct 8635181 AAGAGGTCCCGCACCCGCGACGCGCCCACGCCGACGAACATCTCGATGAACTCGGAGCCG 8635240 Query 12996 GAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTT 13054 || || | || |||||| ||| || || ||||||||||| || || || ||||| Sbjct 8635241 GA-CAGCGAGAAGAAGGGCACGCCGGCCTCCCCCGCGATGGCCTTCGCCAGCAGCGTCTT 8635299 Query 13055 CCCCGTCCCTGG 13066 ||||||||| || Sbjct 8635300 CCCCGTCCCCGG 8635311 Score = 109 bits (120), Expect = 7e-19 Identities = 278/418 (67%), Gaps = 4/418 (1%) Strand=Plus/Plus Query 12690 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 12749 || |||| || |||||||| | ||||| || || || || ||| || | |||| Sbjct 39891012 ACAGTGACCTGCCGATCAAACCTTCCTGGACGCAGAAGCGCAGAGTCCAGCACATCAGGC 39891071 Query 12750 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTC 12809 | ||| ||||| |||| ||| | || || | | | | |||||||||||||||||| Sbjct 39891072 CTGTTGGTCGCAGCGAGGACGATGACACCACTGTTGCCGGCAAAGCCATCCATCTCAGTC 39891131 Query 12810 AAGAGTTGATTGATGGTTTGTTCACGTTCATCATT-CGCGGGCATACCACCCGCACTGCG 12868 ||||| || || ||||| || || | || || || | | | | || |||| || Sbjct 39891132 AAGAGCTGGTTAATGGTCTGCTCCCTCTCGTCGTTACCACCACCGAGC-CCAGCACCACG 39891190 Query 12869 TTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGC 12928 ||| | |||||||| ||||| || || ||||| || || || || || | ||| Sbjct 39891191 CTGCCTCCCGACGGCATCAATCTCATCGATGAAGACAATGCAGGGCGCCTTGGCCTTGGC 39891250 Query 12929 AACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATT 12988 || |||| || ||||| || ||||||||||| || || | ||| || || | Sbjct 39891251 CTTCTCGAAGAGGTCGCGCACCCTGGATGCACCGACACCGACGAAGAGCTCGACGAACTC 39891310 Query 12989 GGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAG 13048 || |||| || || ||| || ||| | || || |||| ||| || || ||||| Sbjct 39891311 GGACGCGGCGCAGGAGAAGAAAGGCACGCCAGCCTCTCCGGCGACGGCACGCGCCAGGAG 39891370 Query 13049 GGTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGT-GGGATCCTGGCACC 13105 ||| || || ||||| || || |||| | | || | | | |||||| ||||||| Sbjct 39891371 GGTTTTACCTGTCCCAGGCGGACCGACGAGGA-GACATCCCTTGGGGATCTTGGCACC 39891427 Score = 102 bits (112), Expect = 1e-16 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 12789 TCGAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCG 12848 || || ||||||||||||||||| ||||| |||| ||||| || | ||||||||| | Sbjct 38499682 TCAAAACCATCCATCTCAGTCAACAGTTGGTTGAGAGTTTGCTCCCTTTCATCATTTCCA 38499623 Query 12849 GGCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATA 12908 | ||| | || | |||| ||||||| || |||||||| |||| || || || Sbjct 38499622 CCACCAATACCTGTACCTCTTTGCCTACCGACAGCATCAATTTCATCAACAAACACTATG 38499563 Query 12909 CACGGTTGATTTTCACGGGCAA-CTTCAAAGATATCTCGCACTCTCTTGGCACCGACACC 12967 || || ||| || ||| ||| ||| | ||| || ||||| ||||| ||||| Sbjct 38499562 CAAGGAGCATTCTCCTTGGCCTTCTTGAAA-AGATCACGAACTCTGGAAGCACCAACACC 38499504 Query 12968 CACAAACATCTCCACAAA 12985 ||||||||||||||||| Sbjct 38499503 AACAAACATCTCCACAAA 38499486 Score = 93.3 bits (102), Expect = 5e-14 Identities = 233/351 (66%), Gaps = 6/351 (2%) Strand=Plus/Plus Query 10495 GAGGAGACGCCCTTCTATCCACGATCCGTCTATGGCGTCTCAAAGGTTGCGGCACATTGG 10554 ||||| ||||| || | || || ||| ||| | || | | ||||| || || || ||| Sbjct 1776975 GAGGACACGCCGTTTCACCCCCGCTCCCCCTACGCCGCCGCCAAGGTCGCCGCGCACTGG 1777034 Query 10555 CTCGTGAAGAATTATCGCGAATCCTATGGTCTCTTTGTGTGCTCCGGTATTCTCTTCAAC 10614 | || || ||||| |||| || ||||| | ||| ||| | ||||||||| Sbjct 1777035 TACACCGTCAACTACCGCGAGGCCTACGGGCTCTTCGCCTGCAACGGCGTGCTCTTCAAC 1777094 Query 10615 CACGAGTCACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCACCGATGGTATCAAA 10674 |||||||| || || || || | | ||||| || |||||||| | || Sbjct 1777095 CACGAGTCCCCACGCCGCGGGGAGAACTTCGTCACGCGCAAGATCACGCGCGCCGTCGGC 1777154 Query 10675 CAAATCGTGGCGGG--TG-AGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGG 10731 | ||| || || || ||| || || | | || ||||||| ||||| ||| Sbjct 1777155 CGCATCAAGGTCGGCCTGCAGACCAAGGTCTTCC---TCGGCAACCTCACCGCCGCCAGG 1777211 Query 10732 GACTGGGGACACGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTCCAACAAGAAGAG 10791 ||||||||| |||| |||||| || || || ||||||||| | || || || || || Sbjct 1777212 GACTGGGGATTCGCCGGGGACTACGTCGAGGCAATGTGGCTCATGCTGCAGCAGGATCAG 1777271 Query 10792 GCGGACGAATATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTTC 10842 | | || || |||||||| || | |||| | ||| |||| ||||||| Sbjct 1777272 CCCGGTGATTACGTCGTCGCCACCGAGGAGTCCCACACCGTGGAGGAGTTC 1777322 >seq7 Length=35964315 Score = 150 bits (166), Expect = 2e-31 Identities = 311/453 (69%), Gaps = 10/453 (2%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| |||||||| ||||||||||||||||| ||||| || | || ||| |||||| Sbjct 23911460 GTACTCCCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCAT 23911519 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGT-TGGCACCCCAATCTGTTTGAGGAGAC 127349 | || |||||||| ||| | || | ||| ||||| | |||| || | Sbjct 23911520 CCAGTCGAATGGGTTGGCGACGTTGTACATCTTCTGGTGCCCCAG-CGCCATGAGCAGGC 23911578 Query 127350 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG-GTTA 127408 | || | |||| |||| ||||||| ||| | | |||||| |||| ||| | | Sbjct 23911579 GGTCGGCGACGAACTCGATGTACTGGCTCATGAGCCCGCCGTTCATTCCGACGAGCGCGA 23911638 Query 127409 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCG 127468 | ||||||||||| ||| |||| | ||| ||||| || || || ||||| || Sbjct 23911639 CG-GGGAGCGCGTCGCAGACGAACTCGCGCTCGATGTCGACGGCGTCGGCGACGATCTCG 23911697 Query 127469 TGAATAGTGTCCACCCCAGGTCTATTGCGTA--AAGTCTT-GAAGAGTTCCACAGCAAAC 127525 | | | || | | | | |||| | | ||| | || ||| || || || Sbjct 23911698 CGGACGCGGCCCTCGTCGAGCTTGCTGCGGAGGAGGTCGTAGAGGAGG--CAG-GCGAAG 23911754 Query 127526 TCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATG 127585 || |||||| |||||||| ||||||||||| || || |||||| || || |||||| Sbjct 23911755 TCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATG 23911814 Query 127586 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCC 127645 || || |||||||| | |||||| || || || || ||||| ||||||||||| ||||| Sbjct 23911815 AGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCA 23911874 Query 127646 ACACACGCGAACGCAAATAGACGCTCGGCAAAG 127678 || || ||||| || | || |||||||| ||| Sbjct 23911875 ACGCAGGCGAAGGCGACGAGGCGCTCGGCGAAG 23911907 >seq5 Length=47252588 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 117135 TTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTG 117194 ||| ||||||||||| ||||| ||||| || ||||||| || || | ||| | || Sbjct 27674939 TTGGGGCCTTGGTGTGCCAGCATTGAAAAGCGTTGGTGAAGCATGTGTAAACCAGCGCTG 27674998 Query 117195 GGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGA 117254 ||||| || ||| |||| | | |||| |||||||||| ||| | || | || Sbjct 27674999 AGACATGAGATGGTAAGTCTTGATGGCAGACTCAATGTCTTCCTTGTGTACCCCCACCGA 27675058 Query 117255 GACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTA 117314 |||| ||| | ||||| || || |||| | | | || | ||| || |||||| Sbjct 27675059 AACCCTCATTAGCATGTGCTGTGGCCTTTCAACAACCTTCCCGCCAAGCTTCAAGAGGTA 27675118 Query 117315 ACTCTTCTCCAAGGTCTTGAGACCAAAATAGCCAAAGTCATAGTCCCT 117362 | | |||||| ||||||| |||||| ||| | ||||| ||||||| Sbjct 27675119 AGACCTCTCCAGAGTCTTGAAACCAAAGTAGTCGTAGTCAAAGTCCCT 27675166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613504615600920