Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq4 181 2e-40 seq7 167 4e-36 >seq4 Length=40407879 Score = 181 bits (200), Expect = 2e-40 Identities = 305/434 (70%), Gaps = 13/434 (3%) Strand=Plus/Plus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| ||||| |||||||||| || || || ||||| | | || ||||| Sbjct 10865817 CTTCTCGAAGAAGTTTGTCTTGCCCTGCAGCGAGATGAGCTCCATCCAGTCAAAGGGGTT 10865876 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 ||| || |||| | ||||||||| |||| | |||||| || || || Sbjct 10865877 GGCGGCGTTGTACATCTTCTTGCACCCGAGAGCCATGAGCAGGCGGTCTGCGACGAACTC 10865936 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 |||||| | ||| || | | ||| || || | ||| ||||||||||| || | Sbjct 10865937 GATGTACTGGCTCATTAGCGCGCCGTTCATGCCGACGAGCGCGACGGGGAGCGCGTCGCA 10865996 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCT-GCGAGACACGT---TCGT 159884 | |||||| ||| || ||||| || |||| || |||| ||| ||| || |||| Sbjct 10865997 GACAAACTCTCGCTCGATGTCGACGGCGTCGGCGACGATCTCGCG-GACGCGGGGCTCGT 10866055 Query 159885 ACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTC 159944 | |||||| | | |||| | | ||||||||||| |||||||||||||| | Sbjct 10866056 ---CGAGCTTGCTGCGGAGGAGGTCGT---AGAGGAGGCACGCGAAGTCGCAGTGCAGGC 10866109 Query 159945 CCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTT 160004 ||||||| || ||||||| ||||||||| | | ||||||||||||||| ||| ||| | Sbjct 10866110 CCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGCCCCCGCTTCT 10866169 Query 160005 TGAGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCAAAC 160063 ||||||| || |||| |||| ||| | | | | || ||||| ||||| ||| || ||| Sbjct 10866170 TGAGCCAGAAGATGG-CGCAGAAGGAGCCCGAGAAGAAGATTCCCTCGACGCAGGCGAAC 10866228 Query 160064 GCCACGAGCCTCTC 160077 || ||||| | ||| Sbjct 10866229 GCGACGAGTCGCTC 10866242 >seq7 Length=35964315 Score = 167 bits (184), Expect = 4e-36 Identities = 299/431 (69%), Gaps = 7/431 (2%) Strand=Plus/Plus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| |||||||||||||||| || || || ||||| | |||||||||| Sbjct 23911475 CTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCATCCAGTCGAATGGGTT 23911534 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 |||| || |||| | || || ||| |||| | ||| || || || || Sbjct 23911535 GGCGACGTTGTACATCTTCTGGTGCCCCAGCGCCATGAGCAGGCGGTCGGCGACGAACTC 23911594 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 |||||| | ||| || | | ||| || || | ||| ||||||||||| || | Sbjct 23911595 GATGTACTGGCTCATGAGCCCGCCGTTCATTCCGACGAGCGCGACGGGGAGCGCGTCGCA 23911654 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCT-GCGAGACACGTTCGTACC 159887 | ||||| ||| || ||||| || |||| || |||| ||| ||| || | | Sbjct 23911655 GACGAACTCGCGCTCGATGTCGACGGCGTCGGCGACGATCTCGCG-GACGCGGCCCTCGT 23911713 Query 159888 CCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCT 159947 | |||||| | | |||| | | |||||||| || ||||||||||| || |||| Sbjct 23911714 CGAGCTTGCTGCGGAGGAGGTCGT---AGAGGAGGCAGGCGAAGTCGCAGTGGAGGCCCT 23911770 Query 159948 CGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTGA 160007 |||| || ||||||| ||||||||| | | ||||||||||||||| || ||| |||| Sbjct 23911771 CGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGGCCGCGCTTCTTGA 23911830 Query 160008 GCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCAAACGCC 160066 |||| || |||| |||| ||| | | | | || ||||| ||||| ||| || || || Sbjct 23911831 GCCAGAAGATGG-CGCAGAAGGAGCCCGAGAAGAAGATGCCCTCAACGCAGGCGAAGGCG 23911889 Query 160067 ACGAGCCTCTC 160077 ||||| | ||| Sbjct 23911890 ACGAGGCGCTC 23911900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795151850408720