Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq1 82.4 5e-11 >seq1 Length=42145699 Score = 82.4 bits (90), Expect = 5e-11 Identities = 150/217 (69%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 39504 ACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTC 39563 ||| || |||| || | ||||| || || || || ||||| || |||| |||| | Sbjct 7134938 ACGGAGCACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTATAGTCAGCCAGGGTGCGTCC 7134879 Query 39564 ATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTT 39623 || || | || || ||| | || || | | |||||| |||| ||| | |||||| || Sbjct 7134878 GTCCTCAAGCTGCTTGCCGGCGAAGATGAGCCTCTGCTGGTCCGGGGGGATGCCTTCCTT 7134819 Query 39624 GTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAA 39682 ||| || || || | ||| | | | ||||| | ||| || || |||||||||| Sbjct 7134818 GTCCTGGATCTTGGCCTTCA-CGTTGTCGATGGTGTCGGAGCTCTCAACCTCCAAAGTAA 7134760 Query 39683 TTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || || || || ||||| || || ||||||||||| Sbjct 7134759 TGGTCTTGCCAGTCAAAGTCTTCACAAAGATCTGCAT 7134723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347368173287921