Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq9 125 3e-23 seq4 111 6e-19 seq2 104 9e-17 seq3 100 1e-15 >seq9 Length=58970307 Score = 125 bits (138), Expect = 3e-23 Identities = 249/366 (68%), Gaps = 11/366 (3%) Strand=Plus/Minus Query 451247 GAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGG- 451305 ||||||||||| ||||||||||||| || ||| || | || ||| || |||| Sbjct 1845792 GAAGAAATTTCTTCTATGGTTCTTATCAAGATGCGTGAGATTGCTGAAGCTTACCTTGGA 1845733 Query 451306 TTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCA 451365 || ||| | | |||| || |||||||||| ||||| || |||||| | || |||| Sbjct 1845732 TTGACCA-TAAAGAATGCTGTGGTTACTGTTCCTGCTTACTTTAATGATTCCCAGAGGCA 1845674 Query 451366 AGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACC 451425 |||||||| ||||| || |||||| || | ||||| | || || || ||||| || Sbjct 1845673 GGCAACTAAGGATGCTGGTGTTATTGCCGGGCTCAATGTCATGCGTATCATCAATGAGCC 1845614 Query 451426 TACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAAC------AGAAGaaaa 451479 || || ||||| | || ||||| || | || |||| || | || || Sbjct 1845613 AACTGCTGCTGCAATTGCCTATGGTCTTGACAA---GAAAGCTACTAGTGTTGGTGAGAA 1845557 Query 451480 aaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGA 451539 ||| | | | ||||| ||||||| || ||| |||| |||| | || | ||||| Sbjct 1845556 GAATGTCCTTATTTTTGACCTTGGTGGTGGCACTTTTGATGTTTCTCTCCTCACTATTGA 1845497 Query 451540 AGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATAT 451599 || || ||||||| || ||||| || |||||| ||||| || || || || || | Sbjct 1845496 GGAGGGTATATTTGAGGTGAAGGCCACAGCTGGTGACACTCACCTTGGTGGGGAGGACTT 1845437 Query 451600 TGATAA 451605 ||| || Sbjct 1845436 TGACAA 1845431 Score = 102 bits (112), Expect = 3e-16 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381 ||||| ||||||||||| ||||||||||||||||| || || || || || || ||||| Sbjct 13464829 GCAGTGATTACTGTTCCAGCTTATTTCAATGATGCTCAGCGTCAGGCCACAAAGGATGCT 13464888 Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441 || | ||||| || | ||||| | || || |||||||| |||||||||||||| Sbjct 13464889 GGCCGCATTGCGGGCCTTGATGTTGAGAGGATCATCAATGAACCAACAGCAGCTGCTCTG 13464948 Query 451442 GCATATGGA 451450 | |||||| Sbjct 13464949 TCTTATGGA 13464957 Score = 96.9 bits (106), Expect = 1e-14 Identities = 122/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 451967 GGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTT 452026 ||||| |||| || |||||| | |||||||||||||||||||| ||||| ||||| ||| Sbjct 1845069 GGAAAGGAACTTTGCAAGAGCATCAATCCTGATGAAGCTGTTGCCTATGGCGCTGCCGTT 1845010 Query 452027 CAAGCAGCTATTCTAACAGGTTCAGATGATGAAAAATTAGGAGATATTCTGTTAGTAGAT 452086 || || ||||| || | ||| | |||| || | || |||| | | ||| Sbjct 1845009 CAGGCTGCTATCCTTAGTGGTGAGGGCAATGAGAAGGTTCAGGACCTTCTCCTCCTCGAT 1844950 Query 452087 GTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGACT 452134 || || || || |||||||| ||||||| || || ||| | |||||| Sbjct 1844949 GTGACCCCACTGTCTCTTGGTCTTGAAACTGCCGGAGGAGTCATGACT 1844902 Score = 86.0 bits (94), Expect = 2e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 248488 CATGGACAAAAAGGAACAGTTGGTATTACTTTGCCACAAAGAGATATGCCTTTCACATCA 248547 ||||||||||||||||| ||||| || |||| ||||| || ||||| | || Sbjct 10263093 CATGGACAAAAAGGAACTGTTGGGATGACTTACACACAAGAGGACATGCCATGGACGATT 10263034 Query 248548 GAAGGTATGACTCCAGATTTAATTTTCAATCCACATGGTATGCCTACACGTATGACTATG 248607 ||||| || || || ||| | ||| | |||||||||| ||| || | ||||||||||| Sbjct 10263033 GAAGGCATCACACCTGATATTATTGTGAATCCACATGCTATTCCATCCCGTATGACTATT 10262974 Query 248608 GGACA 248612 ||||| Sbjct 10262973 GGACA 10262969 >seq4 Length=40407879 Score = 111 bits (122), Expect = 6e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || || ||||| || |||||||||||||| || || || ||| Sbjct 38276892 ATGCAGATCTTTGTCAAGACCCTCACTGGCAAGACTATTACTCTTGAGGTCGAGTCCTCT 38276951 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||||| | | || || ||||| || |||||||| || ||||| || || Sbjct 38276952 GACACGATTGACAATGTCAAGGCGAAGATTCAGGACAAGGAAGGTATCCCTCCGGACCAG 38277011 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || || || || || | ||||| || ||||| ||||| | || ||||| || || ||| Sbjct 38277012 CAGCGGTTGATCTTTGCTGGGAAGCAGCTTGAGGATGGCCGTACCTTGGCTGACTACAAT 38277071 Query 391230 ATTGATAAGGATGCAACACTTCAC 391253 ||| | ||||| | || |||||| Sbjct 38277072 ATTCAGAAGGAGTCTACTCTTCAC 38277095 Score = 93.3 bits (102), Expect = 2e-13 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || ||||||| || || || || ||||| ||||| || || Sbjct 38277348 ATGCAGATCTTTGTGAAGACCTTGACTGGAAAGACCATCACGCTTGAAGTTGAGTCTTCC 38277407 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||||| | || ||| ||||||||||||||||| ||||| || || || Sbjct 38277408 GACACAATTGATAACGTGAAGGCAAAGATTCAAGATAAGGAAGGCATTCCACCAGACCAG 38277467 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || || | || ||| | || || || || || ||||| | ||| | || || ||||| Sbjct 38277468 CAGCGCCTCATCTTCGCTGGAAAGCAGCTGGAGGATGGCCGGACTCTTGCCGACTATAAC 38277527 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 ||| | ||||| | || || ||||| || Sbjct 38277528 ATTCAGAAGGAGTCCACCCTCCACTTGGT 38277556 >seq2 Length=49199997 Score = 104 bits (114), Expect = 9e-17 Identities = 131/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 451271 ACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATT 451330 || || ||||| || ||||||||| || |||| | || | | ||||| || Sbjct 32025642 ACCAAGATGAAGGAGACAGCAGAAGCTTACCTTGGAAAATCTGTCTCGAAGGCAGTGATC 32025701 Query 451331 ACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATT 451390 |||||||| || || ||||||||||| || || || || || ||||||||||| | ||| Sbjct 32025702 ACTGTTCCAGCATACTTCAATGATGCTCAGCGTCAGGCCACAAAAGATGCAGGCCGAATT 32025761 Query 451391 GCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGA 451450 ||||| | | ||| |||| || |||||||| |||||||||||||| | |||||| Sbjct 32025762 GCTGGCCTTGAGGTTGAAAGAATCATCAATGAACCGACAGCAGCTGCTCTGTCCTATGGA 32025821 Score = 91.5 bits (100), Expect = 6e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 391139 TCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGGAAACAACT 391198 ||| || ||||||||||||||||| |||||||| ||| | || ||| | || || || || Sbjct 30949053 TCAGGACAAGGAAGGAATTCCTCCGGATCAACAGCGTCTCATATTCGCCGGCAAGCAGCT 30949112 Query 391199 TGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTTCACTTAGT 391258 || |||||| | || |||| || || || ||| | ||||| |||| |||||||| || Sbjct 30949113 GGAGGATGGACGCACACTGGCTGACTACAACATTCAGAAGGAGTCAACTCTTCACTTGGT 30949172 >seq3 Length=50651951 Score = 100 bits (110), Expect = 1e-15 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381 ||||| || || ||||| ||||| |||||||| ||||| || ||||| |||||||| Sbjct 21470824 GCAGTGATCACAGTTCCTGCTTACTTCAATGACTCACAAAGGACGGCAACAAAAGATGCT 21470765 Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441 || | |||||||| | | ||||| || ||||| ||||| |||||||| || | ||| Sbjct 21470764 GGCCGAATTGCTGGGCTGGAGGTTCTGCGTATTATAAATGAGCCTACAGCGGCATCGCTA 21470705 Query 451442 GCATATGG 451449 |||||||| Sbjct 21470704 GCATATGG 21470697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975709869218396