Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq9 233 1e-55 seq3 123 2e-22 seq8 96.9 3e-14 seq2 93.3 3e-13 seq6 86.0 5e-11 >seq9 Length=58970307 Score = 233 bits (258), Expect = 1e-55 Identities = 694/1060 (65%), Gaps = 18/1060 (2%) Strand=Plus/Plus Query 517259 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 517318 |||| ||||| ||||||||||| ||||| | ||||| || || |||||||| Sbjct 1844666 GCAGAGACATTCAGAATACCATTAGCATCGATGTCAAAGCATACAGTGATCTGAGGGACA 1844725 Query 517319 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 517378 || || ||||||| ||||| || | | |||| | || || ||| || || | Sbjct 1844726 CCCCTAGGAGCAGGGGGGATTCCAGAGAGCTCAAATTTCCCAAGGAGATTGTTGTCCCTG 1844785 Query 517379 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 517438 || | | || ||||| ||| ||||| || ||| || ||||| || || Sbjct 1844786 GTCCGGGTCCTCTCGCCCTCATAAACCTGGATCAACACACCAGGCTGGTTATCCGAGTAG 1844845 Query 517439 GTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGT 517497 || | || || ||| ||| || ||||| || ||||| || ||||| || Sbjct 1844846 GTGGAGAAGAC-CTGCTCTTTCTTGGTTGGAATGGTGGTGTTCCTTGGAATAAGGACAGT 1844904 Query 517498 CATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAAT 517557 ||| | || || || ||||| | ||||||||| || || || ||||| | |||| || Sbjct 1844905 CATGACTCCTCCGGCAGTTTCAAGACCAAGAGACAGTGGGGTCACATCGAGGAGGAGAAG 1844964 Query 517558 ATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATA 517617 | |||| || |||| | |||| ||| ||||| || |||| ||||| ||||| Sbjct 1844965 GTCCTGAACCTTCTCATTGCCCTCACCACTAAGGATAGCAGCCTGAACGGCAGCGCCATA 1845024 Query 517618 TGCAACAGCTTCATCAGGATTAA--CAGTTTCATTTAGTTTTTTACCATTGAAAAAATTT 517675 |||||||||||||||||||| | | || || |||| || |||||||| || | Sbjct 1845025 GGCAACAGCTTCATCAGGATTGATGCTCTTGCAA--AGTTCCTTTCCATTGAAGAAGTCC 1845082 Query 517676 GAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGC 517735 || || || || || || || | || || || ||||| | |||| ||||| Sbjct 1845083 TGCAGCAGCTGCTGGACTTTGGGGATCCTAGTCGAACCACCAACAAGGACAACATCATGG 1845142 Query 517736 ACCTGTGAT-TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGC 517794 || ||| | ||||||| || | |||| | || || || || || | | | Sbjct 1845143 ACA-GTGCTCTTATCCATCTTGGCATCCCTCAGGCACTTCTCCACAGGCTCCATGCACTT 1845201 Query 517795 TCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATC 517854 || || | ||| |||||| || || | ||||| || | ||| || |||| Sbjct 1845202 CCTGAATAGGTCCATGTTAAGTTCCTCAAACCTGGCTCTTGTGATGGTGGAATAGAAATC 1845261 Query 517855 AATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACG 517914 ||| || ||| | | |||||||| |||||||||||| || | | ||||| |||| | Sbjct 1845262 AATGCCCTCGTAGAGAGAATCAATTTCAATCGTAGTCTGCGCTGTGGAAGAAAGTGTCCT 1845321 Query 517915 TTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--ATTCAAA 517972 ||||| | ||||||| ||||| || |||| || || | | | || | | | | Sbjct 1845322 CTTAGCCCTCTCACATGAAGTCCTAAGCCTTCTCAAAGCCCTGG--GGTTCCCAGTGATA 1845379 Query 517973 TCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAA 518032 || | || | ||| | ||| || |||| ||| | | || | || || ||||| Sbjct 1845380 TCCTTCTTGTTTTTCCGCTTAAACTCTTGGACAAAGTGGTTCACCAAGCGGTTGTCAAAG 1845439 Query 518033 TCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCA 518092 || || || || | | ||| | || | || || | || | || | || || ||| Sbjct 1845440 TCCTCCCCACCAAGGTGAGTGTCACCAGCTGTGGCCTTCACCTCAAATATACCCTCCTCA 1845499 Query 518093 AGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATT 518152 | || | |||| |||||| || |||||||| | ||||||||||| |||||| | Sbjct 1845500 ATAGTGAGGAGAGAAACATCAAAAGTGCCACCACCAAGGTCAAAAATAAGGACATTCTTC 1845559 Query 518153 TCTTTGTC-----TTGGTTT-TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCA 518206 || | | | ||| || ||||||||||| |||| |||||||||||||| ||| Sbjct 1845560 TCACCAACACTAGTAGCTTTCTTGTCAAGACCATAGGCAATTGCAGCAGCAGTTGGCTCA 1845619 Query 518207 TTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTT 518266 || || || | || ||||| || || ||||| || ||||| ||||| || || || Sbjct 1845620 TTGATGATACGCATGACATTGAGCCCGGCAATAACACCAGCATCCTTAGTTGCCTGCCTC 1845679 Query 518267 TGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 518306 || ||||| ||||| || ||||||||||||| || |||| Sbjct 1845680 TGGGAATCATTAAAGTAAGCAGGAACAGTAACCACAGCAT 1845719 Score = 87.8 bits (96), Expect = 1e-11 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 518177 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 518236 ||||| | | |||||| || ||||||||||| || || ||| ||||| ||| || ||| Sbjct 13464956 CCATAAGACAGAGCAGCTGCTGTTGGTTCATTGATGATCCTCTCAACATCAAGGCCCGCA 13464897 Query 518237 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 518296 || | || ||||| || ||||| || | || | ||| || ||||| || ||||||||| Sbjct 13464896 ATGCGGCCAGCATCCTTTGTGGCCTGACGCTGAGCATCATTGAAATAAGCTGGAACAGTA 13464837 Query 518297 ATAACGGC 518304 || || || Sbjct 13464836 ATCACTGC 13464829 >seq3 Length=50651951 Score = 123 bits (136), Expect = 2e-22 Identities = 150/203 (74%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 518108 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCT-TGGT- 518165 |||||| ||| ||||| |||| ||||| || || |||||| | || | |||| Sbjct 41235689 ACATCAAAGGTACCACCGCCCAGGTCAAAGATGAGGACATTCTTCTCACCAACACTGGTA 41235748 Query 518166 ----TTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAA 518221 | || ||||||||||| |||| ||||||||||||||| ||||| || || | || | Sbjct 41235749 GCCTTCTTGTCAAGACCATAGGCAATAGCAGCAGCAGTTGGCTCATTGATGATACGCAGA 41235808 Query 518222 ACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAA 518281 || ||||| |||||||| || ||||| || ||||| || || ||||| ||||| || Sbjct 41235809 ACGTTAAGTCCAGCAATCACCCCAGCATCCTTGGTGGCCTGCCTCTGTGAGTCGTTGAAG 41235868 Query 518282 TATGCAGGAACAGTAATAACGGC 518304 || |||||||| || | ||| || Sbjct 41235869 TAGGCAGGAACGGTGACAACAGC 41235891 Score = 104 bits (114), Expect = 2e-16 Identities = 140/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 518104 AGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTG 518163 || ||||||| ||| || || |||| ||||| | || | | |||| || | || Sbjct 5577232 AGATACATCAAAGGTACCGCCTCCCAAGTCAAACACTAGAA---TTGTTTCATTATTTT- 5577287 Query 518164 GTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAAC 518223 | || || | ||||||||| || | ||||||||||||||||| ||||| | | ||| Sbjct 5577288 --TCTTCTCGAAACCATACGCCAATGATGCAGCAGTTGGTTCATTTATAATACGAAGAAC 5577345 Query 518224 ATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATA 518283 | || || ||||| | || |||||||| || ||| |||||||||||||| || || Sbjct 5577346 TTCCAGCCCTGCAATACGACCAGCATCTTTTGTTGCTGTCCTTTGTGAATCGTTGAAGTA 5577405 Query 518284 TGCAGGAACAGTAA 518297 ||| || ||||||| Sbjct 5577406 TGCTGGGACAGTAA 5577419 >seq8 Length=40689132 Score = 96.9 bits (106), Expect = 3e-14 Identities = 203/300 (68%), Gaps = 6/300 (2%) Strand=Plus/Minus Query 671504 CAAATTGCTGGATGTATTGGACAGGTTATTGTTGAAGGAAAAAGAATTCAAATCAGATTC 671563 ||||| |||| ||| |||||||| | |||||||||||| | || | | | | ||| Sbjct 26227098 CAAATGGCTGCTTGTGTTGGACAGCAGAATGTTGAAGGAAAGCGGATCCCATTTGGTTTC 26227039 Query 671564 AATGGTAGAACACTTCCAATGTTCCCTAAATTCGATGACAGTGCATTTTCCAGAGGTT-- 671621 | ||| ||||| | ||| ||| ||| |||||| || | || || Sbjct 26227038 AGTGGCCGAACATTGCCACATTTCAGGAAA---GATGACTATGGTCCTGAAAGTCGTGGA 26226982 Query 671622 TTTGTCGA-AATTCTTTTATTGAGGGTCTTGGACCTTTTGAATTTTTCTTCCAAGTAATG 671680 ||||| || || |||| || |||||| ||| ||||||||||| || | || Sbjct 26226981 TTTGTGGAGAACTCTTACCTTCGGGGTCTAACACCGCAAGAATTTTTCTTTCACGCTATA 26226922 Query 671681 GCAGGTCGTGAAGGTATTATTAATACGGCTATTAAAACTGCTGATACTGGTTATATTCAA 671740 | ||| | |||||| | ||| |||||||| | || ||| |||| ||||| ||||| ||| Sbjct 26226921 GGTGGTAGAGAAGGTCTGATTGATACGGCTGTGAAGACTTCTGAGACTGGGTATATCCAA 26226862 Query 671741 AGAAAACTTGTTAAAATGCTCGAAGATATCAAACAAGAATATGATGGTACAGTAAGAAAT 671800 | | ||||||||| | || || |||| | ||||||||||||| || |||||| Sbjct 26226861 CGCAGGCTTGTTAAAGCTATGGAGGACATCATGGTAAAATATGATGGTACCGTTAGAAAT 26226802 >seq2 Length=49199997 Score = 93.3 bits (102), Expect = 3e-13 Identities = 126/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 518177 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 518236 ||||| | | |||||| || || |||||||| || ||||| ||| | ||| |||||| Sbjct 32025820 CCATAGGACAGAGCAGCTGCTGTCGGTTCATTGATGATTCTTTCAACCTCAAGGCCAGCA 32025761 Query 518237 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 518296 |||| ||||||||||| ||||| || | || | ||| || || ||||| |||||||| Sbjct 32025760 ATTCGGCCTGCATCTTTTGTGGCCTGACGCTGAGCATCATTGAAGTATGCTGGAACAGTG 32025701 Query 518297 ATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTT 518352 || || || | | || ||| |||| ||||| ||| || | ||||| || Sbjct 32025700 ATCACTGCCTTCGAGACAGATTTTCCAAGGTAAGCTTCTGCTGTCTCCTTCATCTT 32025645 >seq6 Length=36014550 Score = 86.0 bits (94), Expect = 5e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 671660 GAATTTTTCTTCCAAGTAATGGCAGGTCGTGAAGGTATTATTAATACGGCTATTAAAACT 671719 ||||| ||||| || | |||| ||| | |||||| ||||| |||| ||| | || ||| Sbjct 4701694 GAATTCTTCTTTCATGCTATGGGTGGTAGAGAAGGTCTTATTGATACAGCTGTCAAGACT 4701753 Query 671720 GCTGATACTGGTTATATTCAAAGAAAACTTGTTAAAATGCTCGAAGATATCAAACAAGAA 671779 |||| ||||| ||||| || | | |||||| ||| | || || |||| | || Sbjct 4701754 TCTGAAACTGGGTATATCCAGCGGAGACTTGTGAAAGCTATGGAGGACATCATGGTAAAA 4701813 Query 671780 TATGATGGTACAGTAAGAAA 671799 ||||||||||| |||||||| Sbjct 4701814 TATGATGGTACTGTAAGAAA 4701833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780805676949922