Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq7 154 2e-32 seq4 150 2e-31 >seq7 Length=35964315 Score = 154 bits (170), Expect = 2e-32 Identities = 123/148 (83%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 102173 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 102232 ||| || ||||| ||| |||| || || || |||||||| ||||||||||| || ||||| Sbjct 23911907 CTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTTGAGGGCATCTTCTTCTCGGGCTCCTT 23911848 Query 102233 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 102292 |||||| || | |||||||||||||| || |||||||| || ||| |||||||||||| Sbjct 23911847 CTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGCCTCACCTTCTCCAACGA 23911788 Query 102293 GCTTATCTCTCGTGACGAGGGACTCCAC 102320 ||| ||||| || |||||||| |||||| Sbjct 23911787 GCTCATCTCCCGCGACGAGGGCCTCCAC 23911760 >seq4 Length=40407879 Score = 150 bits (166), Expect = 2e-31 Identities = 122/148 (82%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 102173 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 102232 ||| || ||||||||| |||| || || || || ||||| ||||||||||| || ||||| Sbjct 10866249 CTTCGCCGAGCGACTCGTCGCGTTCGCCTGCGTCGAGGGAATCTTCTTCTCGGGCTCCTT 10866190 Query 102233 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 102292 |||||| || | |||||||||||||| || |||||||| || ||| |||||||||||| Sbjct 10866189 CTGCGCCATCTTCTGGCTCAAGAAGCGGGGGCTCATGCCGGGCCTCACCTTCTCCAACGA 10866130 Query 102293 GCTTATCTCTCGTGACGAGGGACTCCAC 102320 ||| ||||| || |||||||| || ||| Sbjct 10866129 GCTCATCTCCCGCGACGAGGGCCTGCAC 10866102 Score = 127 bits (140), Expect = 3e-24 Identities = 252/366 (69%), Gaps = 8/366 (2%) Strand=Plus/Minus Query 15888 TCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGCG 15947 |||||||| || || | ||| | || ||| | ||| ||| | | || || || || Sbjct 38499766 TCAAAGCGTCCAGGCCTAAGTAAAGCAGAATCCAAGATGTCAGCTCTGTTAGTGGCAGCA 38499707 Query 15948 ATGACAACAATACC--TGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTAA 16005 || |||| ||| || |||||| | |||||||||||||||| ||||| || ||||| | Sbjct 38499706 ATAACAATAATTCCAGTGTTTCCCT--CAAAACCATCCATCTCAGTCAACAGTTGGTTGA 38499649 Query 16006 TAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGG 16065 |||||| |||| ||||||||| | | ||| | || | |||| | || || | Sbjct 38499648 GAGTTTGCTCCCTTTCATCATTTCCACCACCAATACCTGTACCTCTTTGCCTACCGACAG 38499589 Query 16066 CATCAATCTCATCAATGAAGACGATGCATGGTTGATT-TTCGCGAGCGACTTCAAAGAGA 16124 ||||||| ||||||| || || ||||| || ||| | | | | ||| ||| ||| Sbjct 38499588 CATCAATTTCATCAACAAACACTATGCAAGGAGCATTCTCCTTGGCCTTCTTGAAA-AGA 38499530 Query 16125 TCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACAT 16184 || || || | || || ||||||||||||||||||||||| | | | | ||| || Sbjct 38499529 TCACGAACTCTGGAAGCACCAACACCAACAAACATCTCCACAAACTCAGAGCCTGAA-AT 38499471 Query 16185 TG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 16243 || || || || ||| || || ||||| || || ||| || | ||| ||||| || Sbjct 38499470 TGAGAAAAATGGCACACCAGCCTCTCCCGCGATTGCCTTGGCAAGCAAAGTTTTACCAGT 38499411 Query 16244 ACCTGG 16249 || || Sbjct 38499410 TCCAGG 38499405 Score = 100 bits (110), Expect = 4e-16 Identities = 274/412 (67%), Gaps = 16/412 (4%) Strand=Plus/Plus Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944 |||||||| | ||||| || || ||||| || || | |||| | || || || Sbjct 39891024 CGATCAAACCTTCCTGGACGCAGAAGCGCAGAGTCCAGCACATCAGGCCTGTTGGTCGCA 39891083 Query 15945 GCGATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTA 16004 |||| ||| | | ||| | | | |||| ||||||||||| ||||| ||||||||| Sbjct 39891084 GCGAGGACGATGACACCACTGTTGCCGGCAAAGCCATCCATCTCAGTCAAGAGCTGGTTA 39891143 Query 16005 ATAGTTTGTTCCCGTTCATCATTCGCTGG-CATACCACCAGCACTGCGTTGCTTTCCCAC 16063 || || || |||| || || || | | | | ||||||| || ||| | || || Sbjct 39891144 ATGGTCTGCTCCCTCTCGTCGTTACCACCACCGAGC-CCAGCACCACGCTGCCTCCCGAC 39891202 Query 16064 GGCATCAATCTCATCAATGAAGACGATGCATGG----TTGATTTTCGCGAGCGACTTCAA 16119 ||||||||||||||| |||||||| ||||| || ||| || || | || | Sbjct 39891203 GGCATCAATCTCATCGATGAAGACAATGCAGGGCGCCTTGGCCTTGGCCTTC----TCGA 39891258 Query 16120 AGAGATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGC 16177 |||| || || ||| || | || || ||||| || || | ||| || || | | || Sbjct 39891259 AGAGGTCGCG--CACCCTGGATGCACCGACACCGACGAAGAGCTCGACGAACTCGGACGC 39891316 Query 16178 GGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTT 16237 || || || ||| || || || || || || | ||| || || || || || || Sbjct 39891317 GGCGCAGGAGAAGAAAGGCACGCCAGCCTCTCCGGCGACGGCACGCGCCAGGAGGGTTTT 39891376 Query 16238 ACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGT-GGAATCTTGGCGCC 16288 ||| || || ||| ||| |||||| | || | | | || |||||||| || Sbjct 39891377 ACCTGTCCCAGGCGGACCGACGAGGA-GACATCCCTTGGGGATCTTGGCACC 39891427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620739785122640