Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq7 100 3e-16 seq4 98.7 1e-15 seq5 93.3 5e-14 seq6 84.2 3e-11 >seq7 Length=35964315 Score = 100 bits (110), Expect = 3e-16 Identities = 173/249 (69%), Gaps = 2/249 (1%) Strand=Plus/Plus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || || || || ||||||||||| || |||| || || |||||||| || Sbjct 23911761 TGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGGCCG 23911820 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| |||||||| || || || || |||||||||||||| || ||| Sbjct 23911821 CGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCAACGCAG 23911880 Query 119628 GCGAAAGCGAATAGACGCTCAGC-AAAAGGTCGAGACTTGTCGAACCACTTGAGAGCCCA 119686 ||||| |||| || ||||| || || | || | ||||| ||| | ||||| Sbjct 23911881 GCGAAGGCGACGAGGCGCTCGGCGAAGCGCTCCCCGC-CGTCGATCCAGCGCATGGCCCA 23911939 Query 119687 GTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAGTTGCTTCTTTTC 119746 || |||||| || | | |||||| || | |||||| ||| || || | ||| || Sbjct 23911940 GTCGGCCTTGCGGCGCACGGCGGGGACGGTGTCGATGGCGCGGAAGAGGTGGTCCTTCTC 23911999 Query 119747 AGCACCATC 119755 || || || Sbjct 23912000 GGCGCCGTC 23912008 >seq4 Length=40407879 Score = 98.7 bits (108), Expect = 1e-15 Identities = 252/383 (66%), Gaps = 12/383 (3%) Strand=Plus/Plus Query 11593 AAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGC 11652 || || ||||| || || | |||||||| || ||||| || | ||| ||||| Sbjct 39891114 AAGCCATCCATCTCAGTCAAGAGCTGGTTAATGGTCTGCTCCCTCTCGTCGTTACC---- 39891169 Query 11653 ATACCACCT-GCCGA-----ACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACG 11706 |||||| ||| | ||||| | | ||||| || ||||||||||||||||| || Sbjct 39891170 --ACCACCGAGCCCAGCACCACGCTGCCTCCCGACGGCATCAATCTCATCGATGAAGACA 39891227 Query 11707 ATACACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACA 11766 || || || ||||| |||| ||||| || || || || | || || ||| Sbjct 39891228 ATGCAGGGCGCCTTGGCCTTGGCCTTCTCGAAGAGGTCGCGCACCCTGGATGCACCGACA 39891287 Query 11767 CCTACGAACATCTCAACGAAGTTTGCGGCAGAACACTGAATGAAGGGAACATTAGACTCA 11826 || ||||| | ||| ||||| | | || | || | ||| || || || ||| Sbjct 39891288 CCGACGAAGAGCTCGACGAACTCGGACGCGGCGCAGGAGAAGAAAGGCACGCCAGCCTCT 39891347 Query 11827 CCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCG 11886 || |||| ||| || || ||||| || ||||| || ||||| | ||| |||| || Sbjct 39891348 CCGGCGACGGCACGCGCCAGGAGGGTTTTACCTGTCCCAGGCGGACCGACGAGGAGACAT 39891407 Query 11887 CCACGGGGGATCTTGGCACCACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACA 11946 || ||||||||||||||| | ||| || || ||||||||||| || || Sbjct 39891408 CCCTTGGGGATCTTGGCACCCAGAGCGGTGTACTTGTCTGGGTTCTTGAGGAAATCGACG 39891467 Query 11947 ATCTCCTCAAGTTCCTCCTTGGC 11969 | |||| || || |||||| Sbjct 39891468 ACTTCCTGCAGCTCGAGCTTGGC 39891490 Score = 93.3 bits (102), Expect = 5e-14 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 109744 CGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGT 109803 ||||| ||| ||||||| ||||||||||| || |||||||||||||| || || || Sbjct 4346775 CGTCGACTGTATATGTTAGATGTGTAGGGTTCAAAGCACTCATTGTTGCCAAGAATCTGA 4346716 Query 109804 GCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGA 109849 ||||||||| |||||||| ||||| | |||||| ||||| || Sbjct 4346715 CTAGTGGAAGCAGTGGGCATTGGAGCGACAAGAAGAGAGTTTCTGA 4346670 Score = 93.3 bits (102), Expect = 5e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || || || || ||||||||||| || |||| || || |||||||| || Sbjct 10866103 TGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGCCCC 10866162 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| |||||||| || || || || |||||||| ||||| || ||| Sbjct 10866163 CGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATTCCCTCGACGCAG 10866222 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAA 119653 ||||| |||| || ||||| || || Sbjct 10866223 GCGAACGCGACGAGTCGCTCGGCGAA 10866248 >seq5 Length=47252588 Score = 93.3 bits (102), Expect = 5e-14 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 109744 CGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGT 109803 ||||| ||| ||||||| ||||||||||| || |||||||| ||||| ||||| || Sbjct 27668802 CGTCGACTGTATATGTTAGATGTGTAGGGTTCAAAGCACTCATTATTGCCAAGGATCTGA 27668861 Query 109804 GCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGA 109849 ||||||||| |||||||| ||||| | |||||| ||||| || Sbjct 27668862 CTAGTGGAAGCAGTGGGCATTGGAGCAACAAGAAGAGAGTTTCTGA 27668907 >seq6 Length=36014550 Score = 84.2 bits (92), Expect = 3e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 136702 AACGCACCGTTCTTATAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACG 136761 |||||| ||| || ||||||||||||||||||||| ||||| ||||||| |||||| | Sbjct 28082409 AACGCATCGTCCTATTAGCTCAGTTGGTTAGAGCGTCGTGCTAATAACGCGAAGGTCGCA 28082350 Query 136762 GGTTCGAGCCC 136772 |||||||| || Sbjct 28082349 GGTTCGAGACC 28082339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588973518938600