Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq4 141 1e-28 seq7 123 3e-23 >seq4 Length=40407879 Score = 141 bits (156), Expect = 1e-28 Identities = 253/365 (69%), Gaps = 6/365 (2%) Strand=Plus/Minus Query 9195 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9254 |||||||| || || | ||| | || ||| | ||| ||| | | || || || || Sbjct 38499766 TCAAAGCGTCCAGGCCTAAGTAAAGCAGAATCCAAGATGTCAGCTCTGTTAGTGGCAGCA 38499707 Query 9255 ATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAA 9312 || |||| ||| || |||||| | |||||||||||||||| ||||| |||||||| | Sbjct 38499706 ATAACAATAATTCCAGTGTTTCCCT--CAAAACCATCCATCTCAGTCAACAGTTGGTTGA 38499649 Query 9313 TAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGG 9372 |||||| |||| ||||||||| | | ||| | || | |||| | || || | Sbjct 38499648 GAGTTTGCTCCCTTTCATCATTTCCACCACCAATACCTGTACCTCTTTGCCTACCGACAG 38499589 Query 9373 CATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGAT 9432 ||||||| ||||||| || || || || || ||| || ||| | | || |||| Sbjct 38499588 CATCAATTTCATCAACAAACACTATGCAAGGAGCATTCTCCTTGGCCTTCTTGAAAAGAT 38499529 Query 9433 CGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATT 9492 | ||||| || || || ||||||||||||||||||||||| | | | | ||| ||| Sbjct 38499528 CACGAACTCTGGAAGCACCAACACCAACAAACATCTCCACAAACTCAGAGCCTGAA-ATT 38499470 Query 9493 G-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTA 9551 | || || || ||| || || ||||| || || ||| || | ||| ||||| || Sbjct 38499469 GAGAAAAATGGCACACCAGCCTCTCCCGCGATTGCCTTGGCAAGCAAAGTTTTACCAGTT 38499410 Query 9552 CCTGG 9556 || || Sbjct 38499409 CCAGG 38499405 Score = 125 bits (138), Expect = 8e-24 Identities = 277/408 (68%), Gaps = 8/408 (2%) Strand=Plus/Plus Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251 |||||||| | |||||||| || ||||| || || | |||| | || ||||| Sbjct 39891024 CGATCAAACCTTCCTGGACGCAGAAGCGCAGAGTCCAGCACATCAGGCCTGTTGGTCGCA 39891083 Query 9252 GCGATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGT 9309 |||| ||| | | ||| |||| | |||| ||||||||||| ||||| || |||| Sbjct 39891084 GCGAGGACGATGACACCACTGTTGCCGG--CAAAGCCATCCATCTCAGTCAAGAGCTGGT 39891141 Query 9310 TAATAGTTTGTTCCCGTTCATCATTCGCTGG-CATACCACCAGCACTGCGTTGCTTTCCC 9368 |||| || || |||| || || || | | | | ||||||| || ||| | || Sbjct 39891142 TAATGGTCTGCTCCCTCTCGTCGTTACCACCACCGAGC-CCAGCACCACGCTGCCTCCCG 39891200 Query 9369 ACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 9428 ||||||||||||||||| ||||||||||| || || || | ||| | || ||| Sbjct 39891201 ACGGCATCAATCTCATCGATGAAGACAATGCAGGGCGCCTTGGCCTTGGCCTTCTCGAAG 39891260 Query 9429 AGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9488 || ||||| ||||| || || ||||| || || | ||| || || | | |||| Sbjct 39891261 AGGTCGCGCACCCTGGATGCACCGACACCGACGAAGAGCTCGACGAACTCGGACGCGGCG 39891320 Query 9489 CATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 9548 || || ||| || || || || || || | ||| || || || || || ||||| Sbjct 39891321 CAGGAGAAGAAAGGCACGCCAGCCTCTCCGGCGACGGCACGCGCCAGGAGGGTTTTACCT 39891380 Query 9549 GTACCTGGCTTACCCGCGAGGAGGGCACCCCGT-GGAATCTTGGCGCC 9595 || || ||| ||| |||||| | || ||| | || |||||||| || Sbjct 39891381 GTCCCAGGCGGACCGACGAGGA-GACATCCCTTGGGGATCTTGGCACC 39891427 Score = 123 bits (136), Expect = 3e-23 Identities = 116/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 ||| || ||||| || ||||| || || || || |||||| ||||| |||||||| || Sbjct 10866102 GTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGCCC 10866161 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 ||||||||| | ||| | || |||||||| || || ||||||||||| ||||| || || Sbjct 10866162 CCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATTCCCTCGACGCA 10866221 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAG 117432 || ||||| | || |||||||||||| Sbjct 10866222 GGCGAACGCGACGAGTCGCTCGGCGAAG 10866249 >seq7 Length=35964315 Score = 123 bits (136), Expect = 3e-23 Identities = 116/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 |||||| ||||| || ||||| || || || || |||||| ||||| |||||||| || Sbjct 23911760 GTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGGCC 23911819 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||| | ||| | || |||||||| || || ||||||||||| ||||| || || Sbjct 23911820 GCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCAACGCA 23911879 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAG 117432 || || || | ||||||||||||||| Sbjct 23911880 GGCGAAGGCGACGAGGCGCTCGGCGAAG 23911907 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589978314705880