Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq337 670 0.0 seq14 670 0.0 seq4 428 5e-115 seq7 358 8e-94 seq1 176 5e-39 seq8 93.3 5e-14 seq12 87.8 2e-12 >seq337 Length=135516 Score = 670 bits (742), Expect = 0.0 Identities = 749/998 (75%), Gaps = 2/998 (0%) Strand=Plus/Minus Query 179738 GTGGGATAACTTCTGCGAGTGGGTAACCTCTACCAATAACCGCCTCTATGTCGGTTGGTT 179797 ||||| | ||||||| | ||| |||| ||| | ||||| || || |||| ||||| Sbjct 1636 GTGGGGTCGCTTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTT 1577 Query 179798 CGGCGTTCTGATGATTCCAACTCTGTTGGCAGCAACTATCTGCTTCATCGTCGCCTTCAT 179857 ||| ||| ||||||| || || | ||| | |||||| | || || |||||||||| Sbjct 1576 CGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCCGTATTTATTATCGCCTTCAT 1517 Query 179858 CGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTA 179917 ||||||||| || || || || ||||| || ||||| || || ||||||| | | || Sbjct 1516 CGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTA 1457 Query 179918 TGGTAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTT 179977 ||| ||||| || || |||||||| || ||||| |||| || || || | || || Sbjct 1456 TGGAAACAATATTATTTCTGGTGCTATTATTCCTACTTCTGCGGCGATCGGATTGCATTT 1397 Query 179978 CTATCCCATCTGGGAAGCCGCATCGCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCA 180037 || || || |||||||| ||||| |||| || ||| | || || || ||||||| | Sbjct 1396 TTACCCAATTTGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGCGGTCCTTATGA 1337 Query 180038 ACTTGTCGTCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACT 180097 || | || | |||||| | |||| | | || |||||||||||||||||||| Sbjct 1336 GCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACT 1277 Query 180098 TTCTTATCGCTTGGGTATGCGCCCCTGGATCTGC-GTAGCATATTCTGCTCCAGTCGCTG 180156 | || || ||||||||||||| ||||| ||| || |||||||| ||||| || || | Sbjct 1276 TAGTTTCCGTCTGGGTATGCGCCCTTGGAT-TGCTGTTGCATATTCAGCTCCTGTTGCAG 1218 Query 180157 CAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCATTCTCTGACGCAATGC 180216 | || ||||||| ||| | | |||||| | |||||||| |||||||| | |||| Sbjct 1217 CTGCTACTGCTGTTTTCTTGATTTATCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGC 1158 Query 180217 CCCTCGGCATTTCTGGCACCTTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATCC 180276 | | || || ||||| || ||||||| ||| |||| ||||| || ||||||||||||| Sbjct 1157 CTTTAGGAATATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCGGAGCACAACATCC 1098 Query 180277 TGATGCACCCCTTCCACATGCTGGGAGTAGCAGGTGTCTTCGGCGGTTCACTGTTCTCCG 180336 | ||||| || || |||||| | || ||||| ||||| ||||||||||| || ||| | Sbjct 1097 TTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTG 1038 Query 180337 CAATGCACGGTTCACTGGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACTGAGTCCC 180396 | ||||| ||||| |||| |||||| || | | ||||||||||||| |||||| Sbjct 1037 CTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAATGAGTCTG 978 Query 180397 AGAACTACGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCACATG 180456 || | |||||||| |||||||||||||||||||| || ||||| || ||||| || | Sbjct 977 CTAATGAGGGTTACAAATTTGGTCAAGAAGAAGAGACTTATAACATTGTGGCTGCTCACG 918 Query 180457 GATACTTCGGTCGTCTGATCTTCCAGTATGCATCGTTCAACAACTCCCGTTCACTTCACT 180516 | || || ||||| | |||||||| ||||| ||||||||||| ||||| | |||| Sbjct 917 GTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACT 858 Query 180517 TCTTCCTGGCAGCATGGCCTGTCGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCA 180576 ||||| |||| || |||||||| || || |||||||||||||| | || | || || | Sbjct 857 TCTTCTTGGCTGCTTGGCCTGTAGTAGGGATCTGGTTCACTGCTTTAGGTATTAGTACTA 798 Query 180577 TGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTG 180636 ||||||||||||| || || ||||| |||||||| || | ||||| |||||||||| | Sbjct 797 TGGCATTCAACCTAAATGGATTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGCG 738 Query 180637 TGCTCAACACTTGGGCAGACGTACTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACG 180696 | | || |||||||| || | ||||||| ||| ||| ||||||||||| ||||||| Sbjct 737 TTATTAATACTTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACG 678 Query 180697 AGCGTAATGCTCACAACTTCCCACTTGACCTGGCAGCT 180734 | |||||||||||||||||||| || ||||| || ||| Sbjct 677 AACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCT 640 Score = 569 bits (630), Expect = 2e-157 Identities = 736/1014 (73%), Gaps = 2/1014 (0%) Strand=Plus/Plus Query 181424 TTTGACATCCTTGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGA 181483 ||||| || | || |||||| | | | ||||| || || ||||| || ||||| || Sbjct 8990 TTTGATATTATGGACGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCCGGC 9049 Query 181484 CTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGGGGCTGGCTCACTGGCACTACTTTT 181543 ||| | || ||||| ||||||| | || | ||||| ||| | || || ||||||||| Sbjct 9050 CTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTT 9109 Query 181544 GTTACGTCGTGGTACACCCACGGATTGGCGTCTTCCTACCTTGAGGGTGCTAATTTCCTT 181603 || || || ||||| ||||| |||||||| |||||| | || ||| |||||| | Sbjct 9110 GTAACTTCTTGGTATACCCATGGATTGGCTAGTTCCTATTTGGAAGGTTGCAATTTCTTA 9169 Query 181604 ACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGT 181663 || ||||| || || || ||||| | | | | || ||| | | ||||| ||||| Sbjct 9170 ACCGCGGCGGTTTCCACTCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGC 9229 Query 181664 CCTGAAGCTCAGGGCGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGGCTTTTGTG 181723 || ||||| ||||| ||||| || ||| ||| | || || || ||| ||||||| Sbjct 9230 CCGGAAGCACAGGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTC 9289 Query 181724 GCGCTCCACGGAGCCTTCGCTCTTATCGGTTTTATGCTCAGGCAATTTGAACTTGCTCG- 181782 || ||||| || || || || || || ||||| ||| | | ||||||||||||||||| Sbjct 9290 GCTCTCCATGGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGG 9349 Query 181783 TCTAATCGGAATCCGACCCTACAATGCGATTGCTTTTTCCGGTCCTATTGCTGTATTCGT 181842 ||| || | | || || || ||||| ||| | || || ||||| || || || || || Sbjct 9350 TCTGTTCA-ATTGCGGCCTTATAATGCAATTTCATTCTCTGGTCCAATCGCAGTTTTTGT 9408 Query 181843 CTCTGTATTTCTCATCTATCCTCTGGGACAATCCAGTTGGTTCTTTGCGCCGAGTTTCGG 181902 || ||||| || || ||||| ||||||||||| |||||||||||||||||||||| || Sbjct 9409 TTCCGTATTCCTTATTTATCCACTGGGACAATCTGGTTGGTTCTTTGCGCCGAGTTTTGG 9468 Query 181903 TGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAA 181962 || || || || || || || | || ||| |||| || ||||||||||||||| | || Sbjct 9469 CGTAGCAGCTATATTTCGATTTATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAA 9528 Query 181963 TCCCTTCCATATGATGGGTGTTGCTGGTATCCTGGGTGGCGCATTACTCTCTGCAATTCA 182022 || || ||||||||||| ||||| || | | || | || | || | || || || Sbjct 9529 CCCATTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCAGCTCTGCTATGCGCTATCCA 9588 Query 182023 CGGTGTGACCGTGGAGAATACTCTGTATCAAGACGGTGACCAAGCAAATACTTTCAAAGC 182082 || | ||||| || || ||||| | |||| ||||| |||||||| ||| || Sbjct 9589 TGGGGCTACCGTAGAAAACACTCTATTCGAAGATGGTGATGGTGCAAATACCTTCCGCGC 9648 Query 182083 ATTCGATTCAACTCAAGAAGAAGAAACCTATTCAATGGTTACAGCGAACCGCTTCTGGTC 182142 || | ||||||||| |||||||| ||||||||||| || || |||||||| ||||| Sbjct 9649 TTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTC 9708 Query 182143 TCAGATCTTCGGTATTGCGTTTAGCAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGT 182202 || ||||| ||| |||| ||| |||||| | ||||| |||||||||||||| ||||| Sbjct 9709 CCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGT 9768 Query 182203 TCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCG 182262 || || | ||| | |||| ||| | || || | |||| || ||||| ||||| || Sbjct 9769 ACCCGTCACCGGTTTATGGATGAGTGCTATTGGCGTAGTTGGCCTGGCTCTGAACCTACG 9828 Query 182263 TGCTTATGACTTTGTATCCCAAGAAATCAGAGCATCAGAAGACCCAGAGTTCGAGACGTT 182322 ||| |||||||| || ||||| |||||| | ||| | ||||| || || || ||||| || Sbjct 9829 TGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTT 9888 Query 182323 CTACACAAAGAACATTCTCTTGAATGAAGGTCTGCGTGCATGGTTAGCACCAGTCGATCA 182382 |||||| || || ||||| || || || ||| | ||||| ||| | ||| | ||||| Sbjct 9889 CTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCA 9948 Query 182383 ACCACATGAGAACTTTGTGTTCCCTGAGGAAGTATTACCCAGAGGTAACGCACT 182436 || ||||| || || | ||||||||||| || |||| | || ||||| || Sbjct 9949 GCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 10002 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 |||||||||||||||| || ||||| | || ||||||| | |||||||||||||| ||| Sbjct 99751 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTAGGTTCGAAT 99692 Query 141314 CCTACCTGGGGAG 141326 ||||| ||||||| Sbjct 99691 CCTACTTGGGGAG 99679 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 |||||||||||||||| || ||||| | || ||||||| | |||||||||||||| ||| Sbjct 115669 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTAGGTTCGAAT 115728 Query 141314 CCTACCTGGGGAG 141326 ||||| ||||||| Sbjct 115729 CCTACTTGGGGAG 115741 >seq14 Length=147140 Score = 670 bits (742), Expect = 0.0 Identities = 749/998 (75%), Gaps = 2/998 (0%) Strand=Plus/Minus Query 179738 GTGGGATAACTTCTGCGAGTGGGTAACCTCTACCAATAACCGCCTCTATGTCGGTTGGTT 179797 ||||| | ||||||| | ||| |||| ||| | ||||| || || |||| ||||| Sbjct 81981 GTGGGGTCGCTTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTT 81922 Query 179798 CGGCGTTCTGATGATTCCAACTCTGTTGGCAGCAACTATCTGCTTCATCGTCGCCTTCAT 179857 ||| ||| ||||||| || || | ||| | |||||| | || || |||||||||| Sbjct 81921 CGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCCGTATTTATTATCGCCTTCAT 81862 Query 179858 CGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTA 179917 ||||||||| || || || || ||||| || ||||| || || ||||||| | | || Sbjct 81861 CGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTA 81802 Query 179918 TGGTAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTT 179977 ||| ||||| || || |||||||| || ||||| |||| || || || | || || Sbjct 81801 TGGAAACAATATTATTTCTGGTGCTATTATTCCTACTTCTGCGGCGATCGGATTGCATTT 81742 Query 179978 CTATCCCATCTGGGAAGCCGCATCGCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCA 180037 || || || |||||||| ||||| |||| || ||| | || || || ||||||| | Sbjct 81741 TTACCCAATTTGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGCGGTCCTTATGA 81682 Query 180038 ACTTGTCGTCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACT 180097 || | || | |||||| | |||| | | || |||||||||||||||||||| Sbjct 81681 GCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACT 81622 Query 180098 TTCTTATCGCTTGGGTATGCGCCCCTGGATCTGC-GTAGCATATTCTGCTCCAGTCGCTG 180156 | || || ||||||||||||| ||||| ||| || |||||||| ||||| || || | Sbjct 81621 TAGTTTCCGTCTGGGTATGCGCCCTTGGAT-TGCTGTTGCATATTCAGCTCCTGTTGCAG 81563 Query 180157 CAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCATTCTCTGACGCAATGC 180216 | || ||||||| ||| | | |||||| | |||||||| |||||||| | |||| Sbjct 81562 CTGCTACTGCTGTTTTCTTGATTTATCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGC 81503 Query 180217 CCCTCGGCATTTCTGGCACCTTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATCC 180276 | | || || ||||| || ||||||| ||| |||| ||||| || ||||||||||||| Sbjct 81502 CTTTAGGAATATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCGGAGCACAACATCC 81443 Query 180277 TGATGCACCCCTTCCACATGCTGGGAGTAGCAGGTGTCTTCGGCGGTTCACTGTTCTCCG 180336 | ||||| || || |||||| | || ||||| ||||| ||||||||||| || ||| | Sbjct 81442 TTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTG 81383 Query 180337 CAATGCACGGTTCACTGGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACTGAGTCCC 180396 | ||||| ||||| |||| |||||| || | | ||||||||||||| |||||| Sbjct 81382 CTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAATGAGTCTG 81323 Query 180397 AGAACTACGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCACATG 180456 || | |||||||| |||||||||||||||||||| || ||||| || ||||| || | Sbjct 81322 CTAATGAGGGTTACAAATTTGGTCAAGAAGAAGAGACTTATAACATTGTGGCTGCTCACG 81263 Query 180457 GATACTTCGGTCGTCTGATCTTCCAGTATGCATCGTTCAACAACTCCCGTTCACTTCACT 180516 | || || ||||| | |||||||| ||||| ||||||||||| ||||| | |||| Sbjct 81262 GTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACT 81203 Query 180517 TCTTCCTGGCAGCATGGCCTGTCGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCA 180576 ||||| |||| || |||||||| || || |||||||||||||| | || | || || | Sbjct 81202 TCTTCTTGGCTGCTTGGCCTGTAGTAGGGATCTGGTTCACTGCTTTAGGTATTAGTACTA 81143 Query 180577 TGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTG 180636 ||||||||||||| || || ||||| |||||||| || | ||||| |||||||||| | Sbjct 81142 TGGCATTCAACCTAAATGGATTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGCG 81083 Query 180637 TGCTCAACACTTGGGCAGACGTACTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACG 180696 | | || |||||||| || | ||||||| ||| ||| ||||||||||| ||||||| Sbjct 81082 TTATTAATACTTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACG 81023 Query 180697 AGCGTAATGCTCACAACTTCCCACTTGACCTGGCAGCT 180734 | |||||||||||||||||||| || ||||| || ||| Sbjct 81022 AACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCT 80985 Score = 563 bits (624), Expect = 1e-155 Identities = 737/1014 (73%), Gaps = 6/1014 (1%) Strand=Plus/Plus Query 181425 TTGACATCCTTGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGAC 181484 |||| || | || |||||| | | | ||||| || || ||||| || ||||| || | Sbjct 89662 TTGATATTATGGACGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCCGGCC 89721 Query 181485 TACTTCTTTTTCCCACTGCTTATCTTGCAATTGGGGGCTGGCTCACTGGCACTACTTTTG 181544 || | || ||||| ||||||| | || | ||||| ||| | || || |||||||||| Sbjct 89722 TATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTTG 89781 Query 181545 TTACGTCGTGGTACACCCACGGATTGGCGTCTTCCTACCTTGAGGGTGCTAATTTCCTTA 181604 | || || ||||| ||||| |||||||| |||||| | || ||| |||||| | | Sbjct 89782 TAACTTCTTGGTATACCCATGGATTGGCTAGTTCCTATTTGGAAGGTTGCAATTTCTTAA 89841 Query 181605 CAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTC 181664 | ||||| || || || ||||| | | | | || ||| | | ||||| ||||| | Sbjct 89842 CCGCGGCGGTTTCCACTCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGCC 89901 Query 181665 CTGAAGCTCAGGGCGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGGCTTTTGTGG 181724 | ||||| ||||| ||||| || ||| ||| | || || || ||| ||||||| | Sbjct 89902 CGGAAGCACAGGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTCG 89961 Query 181725 CGCTCCACGGAGCCTTCGCTCTTATCGGTTTTATGCTCAGGCAATTTGAACTTGCTCG-T 181783 | ||||| || || || || || || ||||| ||| | | ||||||||||||||||| | Sbjct 89962 CTCTCCATGGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGGT 90021 Query 181784 CTAATCGGAATCCGACCCTACAATGCGATTGCTTTTTCCGGTCCTATTGCTGTATTCGTC 181843 || || | | || || || ||||| ||| | || || ||||| || || || || || Sbjct 90022 CTGTTCA-ATTGCGGCCTTATAATGCAATTTCATTCTCTGGTCCAATCGCAGTTTTTGTT 90080 Query 181844 TCTGTATTTCTCATCTATCCTCTGGGACAATCCAGTTGGTTCTTTGCGCCGAGTTTCGGT 181903 || ||||| || || ||||| ||||||||||| |||||||||||||||||||||| || Sbjct 90081 TCCGTATTCCTTATTTATCCACTGGGACAATCTGGTTGGTTCTTTGCGCCGAGTTTTGGC 90140 Query 181904 GTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAAT 181963 || || || || ||| | || | || ||| |||| || ||||||||||||||| | || Sbjct 90141 GTAGCAGCTATATTC-GATTTATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAAC 90199 Query 181964 CCCTTCCATATGATGGGTGTTGCTGGTATCCTGGGTGGCGCATTACTCTCTGCAATTCAC 182023 || || ||||||||||| ||||| || | | || | || | || | || || || Sbjct 90200 CCATTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCAGCTCTGCTATGCGCTATCCAT 90259 Query 182024 GGTGTGACCGTGGAGAATACTCTGTATCAAGACGGTGACCAAGCAAATACTTTCAAAGCA 182083 || | ||||| || || ||||| | |||| ||||| |||||||| ||| || Sbjct 90260 GGGGCTACCGTAGAAAACACTCTATTCGAAGATGGTGATGGTGCAAATACCTTCCGCGCT 90319 Query 182084 TTCGATTCAACTCAAGAAGAAGAAACCTATTCAATGGTTACAGCGAACCGCTTCTGGTCT 182143 || | ||||||||| |||||||| ||||||||||| || || |||||||| ||||| Sbjct 90320 TTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCC 90379 Query 182144 CAGATCTTCGGTATTGCGTTTAGCAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGTT 182203 || ||||| ||| |||| ||| |||||| | ||||| |||||||||||||| ||||| Sbjct 90380 CAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGTA 90439 Query 182204 CCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGT 182263 || || | ||| | |||| ||| | || || | |||| || ||||| ||||| ||| Sbjct 90440 CCCGTCACCGGTTTATGGATGAGTGCTATTGGCGTAGTTGGCCTGGCTCTGAACCTACGT 90499 Query 182264 GCTTATGACTTTGTATCCCAAGAAATCAGAGCATCAGAAGACCCAGAGTTCGAGACGTTC 182323 || |||||||| || ||||| |||||| | ||| | ||||| || || || ||||| ||| Sbjct 90500 GCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTC 90559 Query 182324 TACACAAAGAACATTCTCTTGAATGAAGGTCTGCGTGCATGGTTAGCACCAGTC-GATCA 182382 ||||| || || ||||| || || || ||| | ||||| ||| | ||| | || ||||| Sbjct 90560 TACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGC--TCAGATCA 90617 Query 182383 ACCACATGAGAACTTTGTGTTCCCTGAGGAAGTATTACCCAGAGGTAACGCACT 182436 || ||||| || || | ||||||||||| || |||| | || ||||| || Sbjct 90618 GCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 90671 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 |||||||||||||||| || ||||| | || ||||||| | |||||||||||||| ||| Sbjct 44195 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTAGGTTCGAAT 44136 Query 141314 CCTACCTGGGGAG 141326 ||||| ||||||| Sbjct 44135 CCTACTTGGGGAG 44123 >seq4 Length=40407879 Score = 428 bits (474), Expect = 5e-115 Identities = 603/843 (72%), Gaps = 3/843 (0%) Strand=Plus/Plus Query 181595 AATTTCCTTACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTA 181654 |||||| | || ||||| || || || ||||| | | | | || ||| | | ||| Sbjct 27919944 AATTTCTTAACCGCGGCGGTTTCCACTCCTGCCAATAGTTTAGCACACTCTTTGTTGCTA 27920003 Query 181655 CTTTGGGGTCCTGAAGCTCAGGGCGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGG 181714 || ||||| || ||||| ||||| ||||| || ||| ||| | || || || ||| Sbjct 27920004 CTATGGGGCCCGGAAGCACAGGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGG 27920063 Query 181715 GCTTTTGTGGCGCTCCACGGAGCCTTCGCTCTTATCGGTTTTATGCTCAGGCAATTTGAA 181774 |||| || || ||||| || || || || || || |||| ||| | | ||||||||| Sbjct 27920064 ACTTT-GTCGCTCTCCATGGGGCTTTTGCACTAATAAGTTTCATGTTACGTCAATTTGAA 27920122 Query 181775 CTTGCTCG-TCTAATCGGAATCCGACCCTACAATGCGATTGCTTTTTCCGGTCCTATTGC 181833 |||||||| ||| || | | || || || ||||| ||| | || || |||| || || Sbjct 27920123 CTTGCTCGGTCTGTTCA-ATTGCGGCCTTATAATGCAATTTCATTCTCTAGTCCAATCGC 27920181 Query 181834 TGTATTCGTCTCTGTATTTCTCATCTATCCTCTGGGACAATCCAGTTGGTTCTTTGCGCC 181893 || || || || ||||| || || ||||| ||||||||||| |||||||||||||||| Sbjct 27920182 AGTTTTTGTTTCCGTATTCCTTATTTATCCACTGGGACAATCTGGTTGGTTCTTTGCGCC 27920241 Query 181894 GAGTTTCGGTGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTG 181953 |||||| || || || || || || || || | || ||| |||| || ||||||||||| Sbjct 27920242 GAGTTTTGGCGTAGCAGCTATATTTCGATTTATCCTTTTCTTCCAAGGATTTCATAATTG 27920301 Query 181954 GACGCTCAATCCCTTCCATATGATGGGTGTTGCTGGTATCCTGGGTGGCGCATTACTCTC 182013 |||| | || || || ||||||||||| ||||| | | | |||| || | || | Sbjct 27920302 GACGTTGAACCCATTTCATATGATGGGAGTTGCCAGAGTATTAGGTGTAGCTCTGCTATG 27920361 Query 182014 TGCAATTCACGGTGTGACCGTGGAGAATACTCTGTATCAAGACGGTGACCAAGCAAATAC 182073 || || || || | || || || || ||||| | | |||| ||||| |||||||| Sbjct 27920362 CGCTATCCATGGGGCTACTGTAGAAAACACTCTATTTGAAGATGGTGATGGTGCAAATAC 27920421 Query 182074 TTTCAAAGCATTCGATTCAACTCAAGAAGAAGAAACCTATTCAATGGTTACAGCGAACCG 182133 || || || | |||||||||| |||||||| ||||||||||| | || ||||| Sbjct 27920422 CTTTCGCGCTTTTAACCCAACTCAAGATGAAGAAACTTATTCAATGGTCATTGCTAACCG 27920481 Query 182134 CTTCTGGTCTCAGATCTTCGGTATTGCGTTTAGCAATAAGAGGTGGTTGCATTTCTTTAT 182193 ||| ||||| || ||||| ||| |||| ||| |||||| ||||| ||||||||||| Sbjct 27920482 CTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACATTGGTTACATTTCTTTAT 27920541 Query 182194 GCTCTTTGTTCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCT 182253 ||| ||||| || || | || | |||| ||| | || || | |||| | ||||| Sbjct 27920542 GCTATTTGTACCCGTCACCAGTTTATGGATGAGTGCTATTGGCGTAGTTGGCTTGGCTCT 27920601 Query 182254 CAACCTTCGTGCTTATGACTTTGTATCCCAAGAAATCAGAGCATCAGAAGACCCAGAGTT 182313 ||||| | ||| |||||||| | ||||| |||||| | ||| | ||||| || || || Sbjct 27920602 GAACCTACATGCCTATGACTTCATTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATT 27920661 Query 182314 CGAGACGTTCTACACAAAGAACATTCTCTTGAATGAAGGTCTGCGTGCATGGTTAGCACC 182373 ||||| |||||||| || || ||||| || || | ||| | |||| ||| | ||| | Sbjct 27920662 TGAGACTTTCTACACCAAAAATATTCTTTTAAACCAGGGTATTTGTGCGTGGATGGCAGC 27920721 Query 182374 AGTCGATCAACCACATGAGAACTTTGTGTTCCCTGAGGAAGTATTACCCAGAGGTAACGC 182433 ||||| || ||||| || || | ||||||||||| || |||| | || ||||| Sbjct 27920722 TCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCATGTGGAAACGC 27920781 Query 182434 ACT 182436 || Sbjct 27920782 TCT 27920784 >seq7 Length=35964315 Score = 358 bits (396), Expect = 8e-94 Identities = 354/458 (77%), Gaps = 0/458 (0%) Strand=Plus/Plus Query 180273 ATCCTGATGCACCCCTTCCACATGCTGGGAGTAGCAGGTGTCTTCGGCGGTTCACTGTTC 180332 ||| | ||||| || || |||||| | || ||||| ||||| ||||||||||| || ||| Sbjct 24459257 ATCATTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTC 24459316 Query 180333 TCCGCAATGCACGGTTCACTGGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACTGAG 180392 || ||||| ||||| |||| |||| | || | | ||||||||||||| |||| Sbjct 24459317 AGTGCTATGCATGGTTCCTTGGTAACCTATAGTTTGATCAGGGAAACCACTGAAAATGAG 24459376 Query 180393 TCCCAGAACTACGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCA 180452 || || | |||||||| |||||||||||||||| || || ||||| || ||||| Sbjct 24459377 TCTGCTAATGAGGGTTACAAATTTGGTCAAGAAGAAGGGATTTATAACATTGTGGCTGCT 24459436 Query 180453 CATGGATACTTCGGTCGTCTGATCTTCCAGTATGCATCGTTCAACAACTCCCGTTCACTT 180512 ||||| || || ||||| | |||||||| ||||| ||||||||||| |||| | Sbjct 24459437 CATGGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTTGTTCTTTA 24459496 Query 180513 CACTTCTTCCTGGCAGCATGGCCTGTCGTTGGCATCTGGTTCACTGCACTGGGCGTAAGC 180572 ||||||||| |||| || |||||||| || || |||||||||||||| | || | || Sbjct 24459497 CACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATCTGGTTCACTGCTTTAGGTATTAGT 24459556 Query 180573 ACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATTGATGGTCAAGGT 180632 || |||||||||||||| || |||||||| |||||||| || | ||||| |||||||| Sbjct 24459557 ACTATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGT 24459616 Query 180633 CGTGTGCTCAACACTTGGGCAGACGTACTCAACCGCGCTGGTCTGGGTATGGAAGTTATG 180692 || || | || |||||||| || | |||||| ||| ||| ||||||||||| ||| Sbjct 24459617 CGCGTTATTAATACTTGGGCTGATATCACCAACCGTGCTAATCTTGGTATGGAAGTAATG 24459676 Query 180693 CACGAGCGTAATGCTCACAACTTCCCACTTGACCTGGC 180730 ||||| |||||||||||||||||||| || ||||| || Sbjct 24459677 CACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 24459714 >seq1 Length=42145699 Score = 176 bits (194), Expect = 5e-39 Identities = 195/259 (75%), Gaps = 1/259 (0%) Strand=Plus/Plus Query 182091 CAACTCAAGAAGAAGAAACCTATTCAATGGTTACAGCGAACCGCTTCTGGTCTCAGATCT 182150 ||||||||| |||||||| ||||||||||| | || |||||||| |||||||| || | Sbjct 27067131 CAACTCAAGCTGAAGAAACTTATTCAATGGTCATTGCTAACCGCTTGTGGTCTCAAATAT 27067190 Query 182151 TCGGTATTGCGTTTAGCAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGTTCCTGTTA 182210 | ||| |||| ||| |||||| | ||||| |||||||||||||| ||||| || || | Sbjct 27067191 TTGGTGTTGCTTTTTCCAATAAATGTTGGTTACATTTCTTTATGCTATTTGTACCCGTCA 27067250 Query 182211 TGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATG 182270 | | | |||| | | | || || | | || || ||||| ||||| ||||| |||| Sbjct 27067251 CCGAT-TATGGATGACTGCTATTGGCGTAGTAGGCCTGGCTCTGAACCTACGTGCCTATG 27067309 Query 182271 ACTTTGTATCCCAAGAAATCAGAGCATCAGAAGACCCAGAGTTCGAGACGTTCTACACAA 182330 |||| | ||||| |||||| | ||| | ||||| || || || |||| |||||||| | Sbjct 27067310 ACTTCATTTCCCATGAAATCCGTGCAGCGGAAGATCCTGAATTTTAGACTTTCTACACCA 27067369 Query 182331 AGAACATTCTCTTGAATGA 182349 | || ||||| || || || Sbjct 27067370 AAAATATTCTTTTAAACGA 27067388 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 |||||||||||||||| || ||||| | || ||||||| | |||||||||||||| ||| Sbjct 14639612 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTAGGTTCGAAT 14639671 Query 141314 CCTACCTGGGGAG 141326 ||||| ||||||| Sbjct 14639672 CCTACTTGGGGAG 14639684 >seq8 Length=40689132 Score = 93.3 bits (102), Expect = 5e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 180342 CACGGTTCACTGGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACTGAGTCCCAGAAC 180401 |||||||| |||| |||||| || | | ||||||||||||| |||||| || Sbjct 1980306 CACGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAATGAGTCTGCTAAT 1980247 Query 180402 TACGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCACATGGATAC 180461 | |||||||| |||||||||||||||| ||| || ||||| || ||||| || || || Sbjct 1980246 AAGGGTTACAAATTTGGTCAAGAAGAAGGGACTTATAACATTGTGGCTGCTCACGGTTAT 1980187 Query 180462 TTCGGT 180467 || ||| Sbjct 1980186 TTTGGT 1980181 Score = 84.2 bits (92), Expect = 3e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 180342 CACGGTTCACTGGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACTGAGTCCCAGAAC 180401 |||||||| |||| |||||| || | | ||||||| ||||| |||||| || Sbjct 30663754 CACGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCAGTGAAAATGAGTCTGCTAAT 30663695 Query 180402 TACGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCACATGGATAC 180461 | |||||||| || ||||||||||||| ||| || ||||| || ||||| || || || Sbjct 30663694 AAGGGTTACAAATTAGGTCAAGAAGAAGGGACTTATAACATTGTGGCTGCTCACGGTTAT 30663635 Query 180462 TTCGGT 180467 || ||| Sbjct 30663634 TTTGGT 30663629 Score = 84.2 bits (92), Expect = 3e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 180342 CACGGTTCACTGGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACTGAGTCCCAGAAC 180401 |||||||| |||| |||||| || | ||||||||||||| ||||| || Sbjct 30740389 CACGGTTCCTTGGTAACCTCTAGTTTGATCACGGAAACCACTGAAAATGAGTATGCTAAT 30740330 Query 180402 TACGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCACATGGATAC 180461 | |||||||| |||||||||||||||| ||| || ||||| || ||||| || || || Sbjct 30740329 AAGGGTTACAAATTTGGTCAAGAAGAAGGGACTTATAACATTGTGGCTGCTCACGGTTAT 30740270 Query 180462 TTCGGT 180467 || ||| Sbjct 30740269 TTTGGT 30740264 Score = 84.2 bits (92), Expect = 3e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 180342 CACGGTTCACTGGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACTGAGTCCCAGAAC 180401 |||||||| |||| |||||| || | ||||||||||||| ||||| || Sbjct 30748513 CACGGTTCCTTGGTAACCTCTAGTTTGATCACGGAAACCACTGAAAATGAGTATGCTAAT 30748454 Query 180402 TACGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCACATGGATAC 180461 | |||||||| |||||||||||||||| ||| || ||||| || ||||| || || || Sbjct 30748453 AAGGGTTACAAATTTGGTCAAGAAGAAGGGACTTATAACATTGTGGCTGCTCACGGTTAT 30748394 Query 180462 TTCGGT 180467 || ||| Sbjct 30748393 TTTGGT 30748388 Score = 82.4 bits (90), Expect = 9e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 180375 GAAACCACTGAAACTGAGTCCCAGAACTACGGTTACAAGTTTGGTCAAGAAGAAGAGACC 180434 ||||||||||||| |||||| || | |||||||| |||||||||||||||| ||| Sbjct 30734572 GAAACCACTGAAAATGAGTCTGCTAATAAGGGTTACAAATTTGGTCAAGAAGAAGGGACT 30734513 Query 180435 TACAACATCGTTGCTGCACATGGATACTTCGGT 180467 || ||||| || ||||| || || || || ||| Sbjct 30734512 TATAACATTGTGGCTGCTCACGGTTATTTTGGT 30734480 >seq12 Length=360304 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 |||||||||||||||| || ||||| | || ||||||| | |||||||||||||| ||| Sbjct 275781 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTAGGTTCGAAT 275840 Query 141314 CCTACCTGGGGAG 141326 ||||| ||||||| Sbjct 275841 CCTACTTGGGGAG 275853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610394228703480