Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq337 538 5e-148 seq14 538 5e-148 seq7 260 2e-64 >seq337 Length=135516 Score = 538 bits (596), Expect = 5e-148 Identities = 705/975 (72%), Gaps = 6/975 (1%) Strand=Plus/Minus Query 215315 ACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCT---C 215371 || || || ||| | ||| | || ||||| ||||| | ||||| ||| | | | | Sbjct 1605 ACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACC 1546 Query 215372 GCAGCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGA 215431 ||| || || | | | |||| | ||||||||||| ||||| || ||||| || || Sbjct 1545 GCAACTTCCGTATTTATTATCG---CCTTCATCGCTGCTCCTCCAGTAGATATTGATGGT 1489 Query 215432 ATCAGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTT 215491 || | ||||| ||| ||||||||||| | ||||| ||||| || || ||||||||| || Sbjct 1488 ATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATTTCTGGTGCTATT 1429 Query 215492 GTACCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTT 215551 | |||| ||| || |||||||| || || ||||| || |||||||| ||| | ||| Sbjct 1428 ATTCCTACTTCTGCGGCGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCTGTT 1369 Query 215552 GACGAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGT 215611 || |||||| | |||||||| || |||| | || || | | |||||| | ||||| Sbjct 1368 GATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGT 1309 Query 215612 ATTTCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGG 215671 | || || || | ||||||||||| || | | | |||||| | |||||| Sbjct 1308 GTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGG 1249 Query 215672 ATCTGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCA 215731 || |||||| || || || ||||| | ||||| ||| || ||| | | ||||| Sbjct 1248 ATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTATCCT 1189 Query 215732 TTCGGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTAC 215791 | ||||| || ||||||||||| |||||| | ||||| ||||| || ||||||| Sbjct 1188 ATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTT 1129 Query 215792 ATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTG 215851 ||| |||| |||||||| ||||||||||| || ||||| ||||| |||||||||||||| Sbjct 1128 ATGATTGTATTCCAGGCGGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTA 1069 Query 215852 GCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCT 215911 |||||||| ||||| ||||| | ||| ||| ||||| ||||| | || || ||| | Sbjct 1068 GCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGT 1009 Query 215912 CTAATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAG 215971 | ||||| || || ||||| | || ||| || | |||||||| || || ||||| Sbjct 1008 TTGATCAGGGAAACCACTGAAAATGAGTCTGCTAATGAGGGTTACAAATTTGGTCAAGAA 949 Query 215972 GAGGAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATAC 216031 || || || || ||||| || ||||| |||||||| |||||||| | ||||||||||| Sbjct 948 GAAGAGACTTATAACATTGTGGCTGCTCACGGTTATTTTGGTCGATTAATCTTCCAATAT 889 Query 216032 GCATCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGT 216091 || |||||||||||| | | | ||||||||| | || || | ||||| | | Sbjct 888 GCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGG 829 Query 216092 ATCTGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACTTC 216151 |||||| ||||| | ||| | |||||||| |||||||| || || ||||| ||| Sbjct 828 ATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCATTCAACCTAAATGGATTCAATTTC 769 Query 216152 AACCAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACTTGGGCAGACGTTCTTAAC 216211 ||||| ||||| || || ||| |||||| ||||||||| || | | ||| Sbjct 768 AACCAATCTGTAGTTGATAGTCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAAC 709 Query 216212 AGAGCAGGACTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCATTAGAC 216271 | || ||||||||||||||||||||||| ||||| |||||||||||||| ||||| Sbjct 708 CGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGAC 649 Query 216272 TTGGCTGCTGCTGAA 216286 | |||||| |||| Sbjct 648 CTAGCTGCTCTTGAA 634 >seq14 Length=147140 Score = 538 bits (596), Expect = 5e-148 Identities = 705/975 (72%), Gaps = 6/975 (1%) Strand=Plus/Minus Query 215315 ACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCT---C 215371 || || || ||| | ||| | || ||||| ||||| | ||||| ||| | | | | Sbjct 81950 ACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACC 81891 Query 215372 GCAGCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGA 215431 ||| || || | | | |||| | ||||||||||| ||||| || ||||| || || Sbjct 81890 GCAACTTCCGTATTTATTATCG---CCTTCATCGCTGCTCCTCCAGTAGATATTGATGGT 81834 Query 215432 ATCAGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTT 215491 || | ||||| ||| ||||||||||| | ||||| ||||| || || ||||||||| || Sbjct 81833 ATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATTTCTGGTGCTATT 81774 Query 215492 GTACCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTT 215551 | |||| ||| || |||||||| || || ||||| || |||||||| ||| | ||| Sbjct 81773 ATTCCTACTTCTGCGGCGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCTGTT 81714 Query 215552 GACGAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGT 215611 || |||||| | |||||||| || |||| | || || | | |||||| | ||||| Sbjct 81713 GATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGT 81654 Query 215612 ATTTCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGG 215671 | || || || | ||||||||||| || | | | |||||| | |||||| Sbjct 81653 GTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGG 81594 Query 215672 ATCTGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCA 215731 || |||||| || || || ||||| | ||||| ||| || ||| | | ||||| Sbjct 81593 ATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTATCCT 81534 Query 215732 TTCGGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTAC 215791 | ||||| || ||||||||||| |||||| | ||||| ||||| || ||||||| Sbjct 81533 ATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTT 81474 Query 215792 ATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTG 215851 ||| |||| |||||||| ||||||||||| || ||||| ||||| |||||||||||||| Sbjct 81473 ATGATTGTATTCCAGGCGGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTA 81414 Query 215852 GCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCT 215911 |||||||| ||||| ||||| | ||| ||| ||||| ||||| | || || ||| | Sbjct 81413 GCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGT 81354 Query 215912 CTAATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAG 215971 | ||||| || || ||||| | || ||| || | |||||||| || || ||||| Sbjct 81353 TTGATCAGGGAAACCACTGAAAATGAGTCTGCTAATGAGGGTTACAAATTTGGTCAAGAA 81294 Query 215972 GAGGAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATAC 216031 || || || || ||||| || ||||| |||||||| |||||||| | ||||||||||| Sbjct 81293 GAAGAGACTTATAACATTGTGGCTGCTCACGGTTATTTTGGTCGATTAATCTTCCAATAT 81234 Query 216032 GCATCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGT 216091 || |||||||||||| | | | ||||||||| | || || | ||||| | | Sbjct 81233 GCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGG 81174 Query 216092 ATCTGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACTTC 216151 |||||| ||||| | ||| | |||||||| |||||||| || || ||||| ||| Sbjct 81173 ATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCATTCAACCTAAATGGATTCAATTTC 81114 Query 216152 AACCAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACTTGGGCAGACGTTCTTAAC 216211 ||||| ||||| || || ||| |||||| ||||||||| || | | ||| Sbjct 81113 AACCAATCTGTAGTTGATAGTCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAAC 81054 Query 216212 AGAGCAGGACTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCATTAGAC 216271 | || ||||||||||||||||||||||| ||||| |||||||||||||| ||||| Sbjct 81053 CGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGAC 80994 Query 216272 TTGGCTGCTGCTGAA 216286 | |||||| |||| Sbjct 80993 CTAGCTGCTCTTGAA 80979 >seq7 Length=35964315 Score = 260 bits (288), Expect = 2e-64 Identities = 335/462 (73%), Gaps = 0/462 (0%) Strand=Plus/Plus Query 215825 ATGCACCCATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCA 215884 ||||| ||||| |||||||||||||| |||||||| ||||| ||||| | ||| ||| Sbjct 24459263 ATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCT 24459322 Query 215885 ATGCACGGTTCACTTGTTACATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCTCAG 215944 ||||| ||||| | || || | | | | ||||| || || ||||| | || ||| Sbjct 24459323 ATGCATGGTTCCTTGGTAACCTATAGTTTGATCAGGGAAACCACTGAAAATGAGTCTGCT 24459382 Query 215945 AACTACGGTTACAAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGT 216004 || | |||||||| || || ||||| || | | || ||||| || ||||| || ||| Sbjct 24459383 AATGAGGGTTACAAATTTGGTCAAGAAGAAGGGATTTATAACATTGTGGCTGCTCATGGT 24459442 Query 216005 TACTTTGGTCGCCTCATCTTCCAATACGCATCTTTCAACAACTCAAGAAGTCTTCACTTC 216064 || |||||||| | ||||||||||| || |||||||||||| | | | |||||| Sbjct 24459443 TATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTTGTTCTTTACACTTC 24459502 Query 216065 TTCCTTGCAGCATTCCCTGTTATTTGTATCTGGGCAACTGCAATGGGTGTCTCAACTATG 216124 ||| | || || | ||||| | | |||||| ||||| | ||| | |||||| Sbjct 24459503 TTCTTGGCTGCTTGGCCTGTAGTAGGGATCTGGTTCACTGCTTTAGGTATTAGTACTATG 24459562 Query 216125 GCGTTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCGTAGACGCATCTGGTAAAGTT 216184 || |||||||| || |||||||| |||||||| ||||| || || ||| ||| Sbjct 24459563 GCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGCGTT 24459622 Query 216185 ATTCCTACTTGGGCAGACGTTCTTAACAGAGCAGGACTTGGTATGGAAGTAATGCACGAG 216244 ||| ||||||||| || | ||| | || ||||||||||||||||||||||| Sbjct 24459623 ATTAATACTTGGGCTGATATCACCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAA 24459682 Query 216245 CGTAACGCTCACAACTTCCCATTAGACTTGGCTGCTGCTGAA 216286 ||||| |||||||||||||| ||||| | |||| | |||| Sbjct 24459683 CGTAATGCTCACAACTTCCCTCTAGACCTAGCTGGTCTTGAA 24459724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 745078461343760