Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq337 553 2e-152 seq14 553 2e-152 seq7 255 7e-63 >seq337 Length=135516 Score = 553 bits (612), Expect = 2e-152 Identities = 704/969 (73%), Gaps = 0/969 (0%) Strand=Plus/Minus Query 169699 TGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCCCA 169758 ||| |||| ||||| | ||||| | || | || ||||||||||| ||||||||||| Sbjct 1617 TGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCT 1558 Query 169759 TGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGTGGAC 169818 |||| | ||| | || ||||| | || |||||||| ||||| || || || Sbjct 1557 ACCTTATTGACCGCAACTTCCGTATTTATTATCGCCTTCATCGCTGCTCCTCCAGTAGAT 1498 Query 169819 ATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCTCT 169878 || ||||| || | || ||||| | ||||| || | ||||| ||||| || || ||| Sbjct 1497 ATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATTTCT 1438 Query 169879 GGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAGCA 169938 ||||| || |||| |||| || ||||| | || || || || ||||||||||| Sbjct 1437 GGTGCTATTATTCCTACTTCTGCGGCGATCGGATTGCATTTTTACCCAATTTGGGAAGCT 1378 Query 169939 GCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCACTTC 169998 ||| || | ||||| ||||| || || || ||||||||| | || || | | |||||| Sbjct 1377 GCATCTGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTC 1318 Query 169999 CTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGTATG 170058 | | || | || || |||||| | |||||||||| | |||| | |||||| Sbjct 1317 TTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATG 1258 Query 170059 CGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTTA 170118 || |||||||| ||| |||||||| ||||| || |||| || ||||| ||||| Sbjct 1257 CGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTG 1198 Query 170119 GTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACA 170178 | |||||| | ||||| ||| |||||| || || |||||| |||| || || ||||| Sbjct 1197 ATTTATCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACT 1138 Query 170179 TTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCATATG 170238 || ||||| ||| | |||||||| || ||||||||||| |||||||| ||||| || ||| Sbjct 1137 TTCAACTTTATGATTGTATTCCAGGCGGAGCACAACATCCTTATGCATCCATTTCACATG 1078 Query 170239 GCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCACTTGTA 170298 ||| || |||||| | ||||| || | || ||| || ||||| ||||| | ||| Sbjct 1077 TTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTA 1018 Query 170299 ACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATACAAATTC 170358 || ||| | | ||||| || || || || || ||||| || | || |||||||| Sbjct 1017 ACCTCTAGTTTGATCAGGGAAACCACTGAAAATGAGTCTGCTAATGAGGGTTACAAATTT 958 Query 170359 GGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACTTATC 170418 || ||||||||||| || || |||||||| || || || || || |||||| || | ||| Sbjct 957 GGTCAAGAAGAAGAGACTTATAACATTGTGGCTGCTCACGGTTATTTTGGTCGATTAATC 898 Query 170419 TTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACATTCCCT 170478 |||||||||||||| || ||||| |||| | | ||||||||| | ||| | | ||| Sbjct 897 TTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCT 838 Query 170479 GTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAATGGA 170538 |||||| | |||||||| ||| | | |||||| | || |||||||| ||||| |||||| Sbjct 837 GTAGTAGGGATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCATTCAACCTAAATGGA 778 Query 170539 TTTAACTTCAACCAGTCAATCGTAGATGGATCTGGTAAAGTAGTTCCTACATGGGCAGAC 170598 || || |||||||| || | || ||| | ||| || || ||| ||||| || Sbjct 777 TTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGCGTTATTAATACTTGGGCTGAT 718 Query 170599 GTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATGCATGAGCGTAATGCACACAACTTC 170658 | | ||| | || || || ||||||||||||||||| || |||||||| ||||||||| Sbjct 717 ATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTC 658 Query 170659 CCACTTGAC 170667 || || ||| Sbjct 657 CCTCTAGAC 649 >seq14 Length=147140 Score = 553 bits (612), Expect = 2e-152 Identities = 704/969 (73%), Gaps = 0/969 (0%) Strand=Plus/Minus Query 169699 TGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCCCA 169758 ||| |||| ||||| | ||||| | || | || ||||||||||| ||||||||||| Sbjct 81962 TGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCT 81903 Query 169759 TGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGTGGAC 169818 |||| | ||| | || ||||| | || |||||||| ||||| || || || Sbjct 81902 ACCTTATTGACCGCAACTTCCGTATTTATTATCGCCTTCATCGCTGCTCCTCCAGTAGAT 81843 Query 169819 ATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCTCT 169878 || ||||| || | || ||||| | ||||| || | ||||| ||||| || || ||| Sbjct 81842 ATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATTTCT 81783 Query 169879 GGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAGCA 169938 ||||| || |||| |||| || ||||| | || || || || ||||||||||| Sbjct 81782 GGTGCTATTATTCCTACTTCTGCGGCGATCGGATTGCATTTTTACCCAATTTGGGAAGCT 81723 Query 169939 GCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCACTTC 169998 ||| || | ||||| ||||| || || || ||||||||| | || || | | |||||| Sbjct 81722 GCATCTGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTC 81663 Query 169999 CTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGTATG 170058 | | || | || || |||||| | |||||||||| | |||| | |||||| Sbjct 81662 TTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATG 81603 Query 170059 CGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTTA 170118 || |||||||| ||| |||||||| ||||| || |||| || ||||| ||||| Sbjct 81602 CGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTG 81543 Query 170119 GTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACA 170178 | |||||| | ||||| ||| |||||| || || |||||| |||| || || ||||| Sbjct 81542 ATTTATCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACT 81483 Query 170179 TTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCATATG 170238 || ||||| ||| | |||||||| || ||||||||||| |||||||| ||||| || ||| Sbjct 81482 TTCAACTTTATGATTGTATTCCAGGCGGAGCACAACATCCTTATGCATCCATTTCACATG 81423 Query 170239 GCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCACTTGTA 170298 ||| || |||||| | ||||| || | || ||| || ||||| ||||| | ||| Sbjct 81422 TTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTA 81363 Query 170299 ACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATACAAATTC 170358 || ||| | | ||||| || || || || || ||||| || | || |||||||| Sbjct 81362 ACCTCTAGTTTGATCAGGGAAACCACTGAAAATGAGTCTGCTAATGAGGGTTACAAATTT 81303 Query 170359 GGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACTTATC 170418 || ||||||||||| || || |||||||| || || || || || |||||| || | ||| Sbjct 81302 GGTCAAGAAGAAGAGACTTATAACATTGTGGCTGCTCACGGTTATTTTGGTCGATTAATC 81243 Query 170419 TTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACATTCCCT 170478 |||||||||||||| || ||||| |||| | | ||||||||| | ||| | | ||| Sbjct 81242 TTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCT 81183 Query 170479 GTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAATGGA 170538 |||||| | |||||||| ||| | | |||||| | || |||||||| ||||| |||||| Sbjct 81182 GTAGTAGGGATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCATTCAACCTAAATGGA 81123 Query 170539 TTTAACTTCAACCAGTCAATCGTAGATGGATCTGGTAAAGTAGTTCCTACATGGGCAGAC 170598 || || |||||||| || | || ||| | ||| || || ||| ||||| || Sbjct 81122 TTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGCGTTATTAATACTTGGGCTGAT 81063 Query 170599 GTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATGCATGAGCGTAATGCACACAACTTC 170658 | | ||| | || || || ||||||||||||||||| || |||||||| ||||||||| Sbjct 81062 ATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTC 81003 Query 170659 CCACTTGAC 170667 || || ||| Sbjct 81002 CCTCTAGAC 80994 >seq7 Length=35964315 Score = 255 bits (282), Expect = 7e-63 Identities = 326/449 (73%), Gaps = 0/449 (0%) Strand=Plus/Plus Query 170219 TTATGCACCCATTCCATATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAG 170278 ||||||| ||||| || ||| ||| || |||||| | ||||| || | || ||| | Sbjct 24459261 TTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTG 24459320 Query 170279 CAATGCACGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCAC 170338 | ||||| ||||| | ||||| | | | | ||||| || || || || || ||||| Sbjct 24459321 CTATGCATGGTTCCTTGGTAACCTATAGTTTGATCAGGGAAACCACTGAAAATGAGTCTG 24459380 Query 170339 AGAACTATGGATACAAATTCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATG 170398 || | || |||||||| || |||||||||| | || |||||||| || || |||| Sbjct 24459381 CTAATGAGGGTTACAAATTTGGTCAAGAAGAAGGGATTTATAACATTGTGGCTGCTCATG 24459440 Query 170399 GATACTTTGGTAGACTTATCTTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACT 170458 | || |||||| || | ||||||||||||||||| || ||||| | || | | |||| Sbjct 24459441 GTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTTGTTCTTTACACT 24459500 Query 170459 TCTTCCTTGCTACATTCCCTGTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAA 170518 ||||| | ||| | | ||||||||| | |||||||| ||| | | |||||| | || | Sbjct 24459501 TCTTCTTGGCTGCTTGGCCTGTAGTAGGGATCTGGTTCACTGCTTTAGGTATTAGTACTA 24459560 Query 170519 TGGCATTTAACCTTAATGGATTTAACTTCAACCAGTCAATCGTAGATGGATCTGGTAAAG 170578 ||||||| ||||| ||||| || || |||||||| || | || ||| | ||| | Sbjct 24459561 TGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGCG 24459620 Query 170579 TAGTTCCTACATGGGCAGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATGCATG 170638 | || ||| ||||| || | ||| | || || || ||||||||||||||||| | Sbjct 24459621 TTATTAATACTTGGGCTGATATCACCAACCGTGCTAATCTTGGTATGGAAGTAATGCACG 24459680 Query 170639 AGCGTAATGCACACAACTTCCCACTTGAC 170667 | |||||||| ||||||||||| || ||| Sbjct 24459681 AACGTAATGCTCACAACTTCCCTCTAGAC 24459709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582845544752800